Department of Computer Science, School of Information and Computer Sciences, University of California-Irvine, Irvine, California 92697, United States.
Institute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California-Irvine, Irvine, California 92697, United States.
ACS Chem Neurosci. 2021 Aug 4;12(15):2887-2902. doi: 10.1021/acschemneuro.1c00259. Epub 2021 Jul 20.
Neurometabolites are the ultimate gene products in the brain and the most precise biomolecular indicators of brain endophenotypes. Metabolomics is the only "omics" that provides a moment-to-moment "snapshot" of brain circuits' biochemical activities in response to external stimuli within the context of specific genetic variations. Although the expression levels of neurometabolites are highly dynamic, the underlying metabolic processes are tightly regulated during brain development, maturation, and aging. Therefore, this study aimed to identify mouse brain metabolic profiles in neonatal and adult stages and reconstruct both the active metabolic network and the metabolic pathway functioning. Using high-throughput metabolomics and bioinformatics analyses, we show that the neonatal mouse brain has its distinct metabolomic signature, which differs from the adult brain. Furthermore, lipid metabolites showed the most profound changes between the neonatal and adult brain, with some lipid species reaching 1000-fold changes. There were trends of age-dependent increases and decreases among lipids and non-lipid metabolites, respectively. A few lipid metabolites such as HexCers and SHexCers were almost absent in neonatal brains, whereas other non-lipid metabolites such as homoarginine were absent in the adult brains. Several molecules that act as neurotransmitters/neuromodulators showed age-dependent levels, with adenosine and GABA exhibiting around 100- and 10-fold increases in the adult compared with the neonatal brain. Of particular interest is the observation that purine and pyrimidines nucleobases exhibited opposite age-dependent changes. Bioinformatics analysis revealed an enrichment of lipid biosynthesis pathways in metabolites, whose levels increased in adult brains. In contrast, pathways involved in the metabolism of amino acids, nucleobases, glucose (glycolysis), tricarboxylic acid cycle (TCA) were enriched in metabolites whose levels were higher in the neonatal brains. Many of these pathways are associated with pathological conditions, which can be predicted as early as the neonatal stage. Our study provides an initial age-related biochemical directory of the mouse brain and warrants further studies to identify temporal brain metabolome across the lifespan, particularly during adolescence and aging. Such neurometabolomic data may provide important insight about the onset and progression of neurological/psychiatric disorders and may ultimately lead to the development of precise diagnostic biomarkers and more effective preventive/therapeutic strategies.
神经代谢物是大脑中最终的基因产物,也是大脑内表型最精确的生物分子标志物。代谢组学是唯一能够提供大脑回路生化活性的“组学”,可以在特定遗传变异的背景下,对外界刺激做出实时“快照”反应。尽管神经代谢物的表达水平具有高度动态性,但在大脑发育、成熟和衰老过程中,潜在的代谢过程受到严格调控。因此,本研究旨在鉴定新生和成年期小鼠大脑的代谢特征,并重建活跃代谢网络和代谢途径功能。我们使用高通量代谢组学和生物信息学分析,结果表明新生鼠脑具有独特的代谢特征,与成年鼠脑不同。此外,脂质代谢物在新生和成年鼠脑中的变化最为显著,有些脂质种类的变化幅度达到 1000 倍。脂质和非脂质代谢物的变化趋势分别为随年龄增加和减少。少数脂质代谢物,如 HexCers 和 SHexCers,在新生鼠脑中几乎不存在,而其他非脂质代谢物,如 homoarginine,在成年鼠脑中不存在。一些作为神经递质/神经调质的分子表现出年龄依赖性水平,与新生鼠脑相比,腺苷和 GABA 在成年鼠脑中的含量分别增加了 100 倍和 10 倍。特别值得注意的是,嘌呤和嘧啶核苷碱基表现出相反的年龄依赖性变化。生物信息学分析显示,脂质生物合成途径相关的代谢物水平升高,而在新生鼠脑中,与氨基酸、核苷酸碱基、葡萄糖(糖酵解)、三羧酸循环(TCA)代谢相关的途径相关的代谢物水平升高。许多这些途径与病理状况相关,早在新生阶段就可以预测到。我们的研究为小鼠大脑提供了一个与年龄相关的生化目录,并需要进一步研究来鉴定整个生命过程中的大脑代谢组,特别是在青春期和衰老期。这些神经代谢组数据可以为神经/精神疾病的发病和进展提供重要的见解,并可能最终导致精确的诊断生物标志物和更有效的预防/治疗策略的发展。