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新种和新种,从一个海水养殖鱼塘中分离得到。

sp. nov. and sp. nov., isolated from a mariculture fishpond.

机构信息

Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, PR China.

State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, PR China.

出版信息

Int J Syst Evol Microbiol. 2021 Jul;71(7). doi: 10.1099/ijsem.0.004914.

Abstract

Two Gram-stain-negative, catalase-positive, oxidase-negative, rod-shaped, non-flagellated, non-spore-forming and non-motile strains (YJ13C and H41) were isolated from a mariculture fishpond in PR China. Comparisons based on 16S rRNA gene sequences indicated that YJ13C and H41 shared 16S rRNA gene sequences similarities between 92.6 and 99.2 % with species of the genus . YJ13C only shared 93.8 % 16S rRNA gene sequence similarity with H41. The reconstructed phylogenetic and phylogenomic trees indicated that YJ13C and H41 clustered closely with species of the genus . The calculated pairwise orthologous average nucleotide identity with usearch (OrthoANIu) values between strains YJ13C and H41 and other related strains were all less than 79.5 %. The OrthoANIu value between YJ13C and H41 was only 69.9 %. MK-7 was the predominant respiratory quinone of YJ13C and H41 and their major cellular fatty acids contained iso-C, C ω7 and C ω9. The polar lipids profiles of YJ13C and H41 consisted of phosphatidylethanolamine and several kinds of unidentified lipids. Combining the above descriptions, strains YJ13C and H41 represent two distinct novel species of the genus , for which the names sp. nov. (type strain YJ13C=GDMCC 1.2178=KCTC 82450) and sp. nov. (type strain H41=GDMCC 1.2179=KCTC 82451) are proposed.

摘要

两株革兰氏阴性、过氧化氢酶阳性、氧化酶阴性、杆状、无鞭毛、不产孢、不运动的菌株(YJ13C 和 H41)从中国水产养殖鱼池中分离得到。基于 16S rRNA 基因序列的比较表明,YJ13C 和 H41 与属内的种的 16S rRNA 基因序列相似性在 92.6%至 99.2%之间。YJ13C 与 H41 仅共享 93.8%的 16S rRNA 基因序列相似性。重建的系统发育和系统基因组树表明,YJ13C 和 H41 与属内的种聚类密切。菌株 YJ13C 和 H41 与其他相关菌株之间使用 usearch(OrthoANIu)计算的成对直系同源平均核苷酸同一性值均小于 79.5%。YJ13C 和 H41 之间的 OrthoANIu 值仅为 69.9%。MK-7 是 YJ13C 和 H41 的主要呼吸醌,其主要细胞脂肪酸含有 iso-C、C ω7 和 C ω9。YJ13C 和 H41 的极性脂谱由磷脂酰乙醇胺和几种未鉴定的脂组成。综合以上描述,菌株 YJ13C 和 H41 代表属内的两个新的独特种,分别命名为 sp. nov.(模式菌株 YJ13C=GDMCC 1.2178=KCTC 82450)和 sp. nov.(模式菌株 H41=GDMCC 1.2179=KCTC 82451)。

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