Liu Zichuan, Li Jianchang, Hu Xiaoshan, Xu Houwei
Department of Internal Medicine, Affiliated Cancer Hospital & Institute of Guangzhou Medical University, Guangzhou, China.
Department of Gastrointestinal Surgery, Affiliated Cancer Hospital & Institute of Guangzhou Medical University, Guangzhou, China.
J Gastrointest Oncol. 2021 Jun;12(3):1058-1073. doi: 10.21037/jgo-21-305.
() infection is closely associated with the tumorigenesis of gastric cancer. The aim of the present study was to identify the key regulator in H. pylori-related gastric cancer and to study the expression level and clinical value of the indicated key regulator in gastric cancer.
The GSE6143 dataset was used to identify differentially expressed genes (DEGs) with limma R package, and enrichment analysis was done using the Metascape web-based portal. The protein-protein interaction analysis was done using Search Tool for the Retrieval of Interacting Genes/Proteins. Gastric adenocarcinoma AGS and BGC-823 cells were treated with strain 26695 to construct the infection model, and quantitative reverse transcription polymerase chain reaction was used to analyze the mRNA levels of indicated genes. The correlation analysis between two genes in gastric cancer was done by GEPIA. Furthermore, the PTPRC expression by pathological features analysis was conducted in UALCAN, an easy to use, interactive web-portal (http://ualcan.path.uab.edu). The survival analysis for gastric cancer, based on PTPRC expression levels, was done using the Kaplan-Meier plotter.
DEGs in gastric mucosa with or without infection were identified and enriched in immune-related pathways and cancer pathways. The protein-protein interaction analysis confirmed the enrichment analysis of gene ontology. strain 26695 exposure also confirmed the alteration of gene expression levels in AGS and BGC-823 cells. PTPRC was co-expressed with and , indicating a significant positive correlation in gastric cancer. PTPRC was overexpressed in gastric cancer, and the overexpression of PTPRC was positively correlated with the progression of gastric cancer. Furthermore, the high expression of PTPRC could act as a poor prognostic factor for gastric cancer patients, especially for those at advanced stage.
-induced PTPRC is overexpressed in gastric cancer, and the overexpression of PTPRC is positively associated with the development of gastric cancer. The high expression of PTPRC could serve as poor prognostic biomarker for gastric cancer patients, especially for those at advanced stage. -induced PTPRC is a prognostic biomarker for gastric cancer.
()感染与胃癌的肿瘤发生密切相关。本研究的目的是确定幽门螺杆菌相关胃癌中的关键调节因子,并研究该关键调节因子在胃癌中的表达水平及临床价值。
使用GSE6143数据集,通过limma R包鉴定差异表达基因(DEGs),并使用基于网页的Metascape门户进行富集分析。使用检索相互作用基因/蛋白质的搜索工具进行蛋白质-蛋白质相互作用分析。用26695菌株处理胃腺癌AGS和BGC-823细胞以构建感染模型,并使用定量逆转录聚合酶链反应分析指定基因的mRNA水平。通过GEPIA分析胃癌中两个基因之间的相关性。此外,在易于使用的交互式网页门户UALCAN(http://ualcan.path.uab.edu)中,通过病理特征分析进行PTPRC表达。使用Kaplan-Meier绘图仪基于PTPRC表达水平对胃癌进行生存分析。
鉴定了有或无感染的胃黏膜中的DEGs,并在免疫相关途径和癌症途径中富集。蛋白质-蛋白质相互作用分析证实了基因本体的富集分析。26695菌株暴露也证实了AGS和BGC-823细胞中基因表达水平的改变。PTPRC与和共表达,表明在胃癌中呈显著正相关。PTPRC在胃癌中过表达,且PTPRC的过表达与胃癌进展呈正相关。此外,PTPRC的高表达可作为胃癌患者,尤其是晚期患者的不良预后因素。
幽门螺杆菌诱导的PTPRC在胃癌中过表达,且PTPRC的过表达与胃癌的发展呈正相关。PTPRC的高表达可作为胃癌患者,尤其是晚期患者的不良预后生物标志物。幽门螺杆菌诱导的PTPRC是胃癌的预后生物标志物。