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通过小麦的 mGWAS 和 mQTL 探索代谢物的基因资源:从大规模基因鉴定和途径阐明到作物改良。

Exploring the genic resources underlying metabolites through mGWAS and mQTL in wheat: From large-scale gene identification and pathway elucidation to crop improvement.

机构信息

National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China.

College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.

出版信息

Plant Commun. 2021 Jun 30;2(4):100216. doi: 10.1016/j.xplc.2021.100216. eCollection 2021 Jul 12.

Abstract

Common wheat ( L.) is a leading cereal crop, but has lagged behind with respect to the interpretation of the molecular mechanisms of phenotypes compared with other major cereal crops such as rice and maize. The recently available genome sequence of wheat affords the pre-requisite information for efficiently exploiting the potential molecular resources for decoding the genetic architecture of complex traits and identifying valuable breeding targets. Meanwhile, the successful application of metabolomics as an emergent large-scale profiling methodology in several species has demonstrated this approach to be accessible for reaching the above goals. One such productive avenue is combining metabolomics approaches with genetic designs. However, this trial is not as widespread as that for sequencing technologies, especially when the acquisition, understanding, and application of metabolic approaches in wheat populations remain more difficult and even arguably underutilized. In this review, we briefly introduce the techniques used in the acquisition of metabolomics data and their utility in large-scale identification of functional candidate genes. Considerable progress has been made in delivering improved varieties, suggesting that the inclusion of information concerning these metabolites and genes and metabolic pathways enables a more explicit understanding of phenotypic traits and, as such, this procedure could serve as an -omics-informed roadmap for executing similar improvement strategies in wheat and other species.

摘要

普通小麦(L.)是一种主要的谷类作物,但与其他主要谷类作物(如水稻和玉米)相比,在解释表型的分子机制方面相对滞后。小麦最近可用的基因组序列为有效利用潜在的分子资源提供了必要的信息,用于解码复杂性状的遗传结构和鉴定有价值的育种目标。同时,代谢组学作为一种新兴的大规模分析方法在多个物种中的成功应用证明了这种方法可以实现上述目标。其中一个富有成效的途径是将代谢组学方法与遗传设计相结合。然而,这种尝试并不像测序技术那样广泛,特别是在获取、理解和应用小麦群体中的代谢方法方面仍然更加困难,甚至可以说尚未得到充分利用。在这篇综述中,我们简要介绍了代谢组学数据获取中使用的技术及其在大规模鉴定功能候选基因中的应用。在提供改良品种方面已经取得了相当大的进展,这表明包含这些代谢物、基因以及代谢途径的信息可以更清楚地了解表型特征,因此,该程序可以作为一个“组学”指导路线图,用于在小麦和其他物种中执行类似的改良策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4044/8299079/6b578a01770f/gr1.jpg

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