Animal Breeding and Genomics, Wageningen University and Research, P.O. Box 338, 6700 AH Wageningen, The Netherlands.
J Anim Sci. 2021 Sep 1;99(9). doi: 10.1093/jas/skab222.
In beef cattle maternally influenced traits, estimates of direct-maternal genetic correlations (rdm) are usually reported to be negative. In international evaluations, rdm can differ both within countries (rdm_WC) and between countries (rdm_BC). The rdm_BC are difficult to estimate and are assumed to be zero in the current model for international beef cattle evaluations (Interbeef). Our objective was to investigate re-ranking of international estimated breeding values (IEBVs) in international beef cattle evaluations between models that either used estimated values for rdm or assumed them to be 0. Age-adjusted weaning weights and pedigree data were available for Limousin beef cattle from ten European countries. International EBVs were obtained using a multi-trait animal model with countries modeled as different traits. We compared IEBVs from a model that uses estimated rdm_BC (ranging between -0.14 and +0.14) and rdm_WC (between -0.33 and +0.40) with IEBVs obtained either from the current model that assumes rdm_BC to be 0, or from an alternative model that assumes both rdm_BC and rdm_WC to be 0. Direct and maternal IEBVs were compared across those three scenarios for different groups of animals. The ratio of population accuracies from the linear regression method was used to further investigate the impact of rdm on international evaluations, for both the whole set of animals in the evaluation and the domestic ones. Ignoring rdm_BC, i.e., replacing estimated values with 0, resulted in no (rank correlations > 0.99) or limited (between 0.98 and 0.99) re-ranking for direct and maternal IEBVs, respectively. Both rdm_BC and rdm_WC had less impact on direct IEBVs than on maternal IEBVs. Re-ranking of maternal IEBVs decreased with increasing reliability. Ignoring rdm_BC resulted in no re-ranking for sires with IEBVs that might be exchanged across countries and limited re-ranking for the top 100 sires. Using estimated rdm_BC values instead of considering them to be 0 resulted in null to limited increases in population accuracy. Ignoring both rdm_BC and rdm_WC resulted in considerable re-ranking of animals' IEBVs in all groups of animals evaluated. This study showed the limited impact of the current practice of ignoring rdm_BC in international evaluations for Limousin weaning weight, most likely because the estimated rdm_BC was close to 0. We expect that these conclusions can be extended to other traits that have reported rdm values in the range of rdm_WC values for weaning weight in Limousin.
在肉牛的母系影响性状中,直接母系遗传相关(rdm)的估计值通常为负值。在国际评估中,rdm 不仅在国内(rdm_WC),而且在国家之间(rdm_BC)也存在差异。rdm_BC 很难估计,并且在当前用于国际肉牛评估的模型(Interbeef)中被假定为零。我们的目的是研究在使用估计的 rdm_BC 值或假定其为 0 的模型之间,国际肉牛评估中 rdmbc 的重新排序对国际估计育种值(IEBV)的影响。我们为来自十个欧洲国家的利木赞肉牛获得了年龄调整后的断奶体重和系谱数据。使用多性状动物模型获得国际 EBV,其中各国均作为不同性状进行建模。我们比较了使用估计的 rdm_BC(范围在-0.14 到+0.14 之间)和 rdm_WC(范围在-0.33 到+0.40 之间)的模型的 IEBVs 与当前模型的 IEBVs 假设 rdm_BC 为 0,或替代模型假设 rdm_BC 和 rdm_WC 均为 0。对于不同组别的动物,我们在这三种情况下比较了直接和母系的 IEBVs。使用线性回归方法的种群准确性比进一步研究了 rdm 对国际评估的影响,用于评估中的所有动物群体和国内动物群体。忽略 rdm_BC,即使用 0 替换估计值,对直接和母系 IEBVs 的重新排序没有(秩相关系数>0.99)或有限(在 0.98 和 0.99 之间)。rdm_BC 和 rdm_WC 对直接 IEBVs 的影响均小于对母系 IEBVs 的影响。随着可靠性的增加,母系 IEBVs 的重新排序减少。忽略 rdm_BC 会导致在国家间交换的 EBV 公牛的重新排序没有,而对前 100 名公牛的重新排序有限。使用估计的 rdm_BC 值而不是将其视为 0 会导致群体准确性略有增加或无增加。忽略 rdm_BC 和 rdm_WC 会导致所有评估动物群体的动物 IEBVs 的大量重新排序。这项研究表明,在国际利木赞断奶体重评估中忽略 rdm_BC 的当前做法的影响有限,这很可能是因为估计的 rdm_BC 接近 0。我们预计这些结论可以扩展到其他报告断奶体重利木赞 rdm 值在 rdm_WC 值范围内的性状。