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基于加权基因共表达网络分析的预后标志物识别及在胃癌中的验证。

Prognostic marker identification based on weighted gene co-expression network analysis and associated confirmation in gastric cancer.

机构信息

Department of Clinical Laboratory, The Affiliated Hospital of Guilin Medical University, Guangxi, Guilin, China.

Central Laboratory, Guangxi Health Commission Key Laboratory of Glucose and Lipid Metabolism Disorders, The Second Affiliated Hospital of Guilin Medical University, Guilin, Guangxi, China.

出版信息

Bioengineered. 2021 Dec;12(1):4666-4680. doi: 10.1080/21655979.2021.1957645.

Abstract

The aim of this study was to explore the potential molecular mechanisms of Gastric cancer (GC) and identify new prognostic markers for GC. RNA sequencing data were downloaded from the Gene Expression Omnibus database, and 418 differentially expressed genes (DEGs) were screened. Weighted correlation network analysis (WGCNA) was performed to identify six hub modules related to the clinical features of GC. Cytoscape software was used to identify five hub genes in the co-expression network, including CST1, CEMIP, COL8A1, PMEPA1, and MSLN. The TCGA database was used to verify hub gene expression in GC. The overall survival in the high CEMIP expression group was significantly lower than that of patients in the low CEMIP expression group. CEMIP expression was also found to be negatively correlated with B cell and CD4 + T cell infiltration. Further, associated in vitro experiments confirmed that CEMIP downregulation suppressed the proliferation and migration of GC cells and impaired the chemoresistance of GC cells to 5-fluorouracil.Our study effectively identified and validated prognostic biomarkers for GC, laying a new foundation for the therapeutic target, occurrence, and development of gastric cancer.

摘要

本研究旨在探索胃癌(GC)的潜在分子机制,并确定 GC 的新预后标志物。从基因表达综合数据库中下载 RNA 测序数据,并筛选出 418 个差异表达基因(DEGs)。进行加权相关网络分析(WGCNA)以鉴定与 GC 临床特征相关的六个关键模块。使用 Cytoscape 软件在共表达网络中鉴定出五个关键基因,包括 CST1、CEMIP、COL8A1、PMEPA1 和 MSLN。使用 TCGA 数据库验证 GC 中关键基因的表达。高 CEMIP 表达组的总生存率明显低于低 CEMIP 表达组的患者。还发现 CEMIP 表达与 B 细胞和 CD4+T 细胞浸润呈负相关。此外,相关的体外实验证实 CEMIP 下调抑制了 GC 细胞的增殖和迁移,并损害了 GC 细胞对 5-氟尿嘧啶的化学耐药性。我们的研究有效地鉴定和验证了 GC 的预后生物标志物,为胃癌的治疗靶点、发生和发展奠定了新的基础。

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