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Taxonomic Sampling and Rare Genomic Changes Overcome Long-Branch Attraction in the Phylogenetic Placement of Pseudoscorpions.分类采样和罕见的基因组变化克服了长枝吸引在伪蝎系统发育定位中的影响。
Mol Biol Evol. 2021 May 19;38(6):2446-2467. doi: 10.1093/molbev/msab038.
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Systemic paralogy and function of retinal determination network homologs in arachnids.蛛形纲动物中视网膜决定网络同源物的系统发育及功能
BMC Genomics. 2020 Nov 23;21(1):811. doi: 10.1186/s12864-020-07149-x.
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Genomic resources and toolkits for developmental study of whip spiders (Amblypygi) provide insights into arachnid genome evolution and antenniform leg patterning.用于鞭蛛(无鞭目)发育研究的基因组资源和工具包为蛛形纲动物基因组进化和触角状腿的模式形成提供了见解。
Evodevo. 2020 Aug 28;11:18. doi: 10.1186/s13227-020-00163-w. eCollection 2020.
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Chromosome-level genome assembly of the coastal horseshoe crab (Tachypleus gigas).沿海马蹄蟹(Tachypleus gigas)的染色体水平基因组组装。
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MakeHub: Fully Automated Generation of UCSC Genome Browser Assembly Hubs.MakeHub:全自动生成 UCSC 基因组浏览器组装中心。
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Developmental gene expression as a phylogenetic data class: support for the monophyly of Arachnopulmonata.作为一个系统发生数据类的发育基因表达:对蛛形纲呼吸系统单系性的支持。
Dev Genes Evol. 2020 Mar;230(2):137-153. doi: 10.1007/s00427-019-00644-6. Epub 2020 Jan 11.
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Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida.增加蛛形纲基因组规模数据集的物种采样为蛛形纲和节肢动物的单系性提供了支持。
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一条盲蛛(盲蛛目)的基因组揭示了蛛形纲附肢的演化。

The genome of a daddy-long-legs (Opiliones) illuminates the evolution of arachnid appendages.

机构信息

Department of Integrative Biology, University of Wisconsin-Madison, Madison, 53706 WI, USA.

Global Genome Initiative, Smithsonian Institution, National Museum of Natural History, 10th and Constitution, NW, Washington, DC 20560-0105, USA.

出版信息

Proc Biol Sci. 2021 Aug 11;288(1956):20211168. doi: 10.1098/rspb.2021.1168. Epub 2021 Aug 4.

DOI:10.1098/rspb.2021.1168
PMID:34344178
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8334856/
Abstract

Chelicerate arthropods exhibit dynamic genome evolution, with ancient whole-genome duplication (WGD) events affecting several orders. Yet, genomes remain unavailable for a number of poorly studied orders, such as Opiliones (daddy-long-legs), which has hindered comparative study. We assembled the first harvestman draft genome for the species , which bears elongate, prehensile appendages, made possible by numerous distal articles called tarsomeres. Here, we show that the genome of exhibits a single Hox cluster and no evidence of WGD. To investigate the developmental genetic basis for the quintessential trait of this group-the elongate legs-we interrogated the function of the Hox genes () and (), and a homologue of (). Knockdown of incurred homeotic transformation of two pairs of legs into pedipalps, with dramatic shortening of leg segments in the longest leg pair, whereas homeosis in L3 is only achieved upon double knockdown. Knockdown of incurred shortened appendages and the loss of tarsomeres. The similarity of loss-of-function phenotypic spectra in insects and this arachnid suggest that repeated cooption of EGFR signalling underlies the independent gains of supernumerary tarsomeres across the arthropod tree of life.

摘要

螯肢动物表现出动态的基因组进化,古老的全基因组复制(WGD)事件影响了几个目。然而,许多研究较少的目,如长脚蛛目(daddy-long-legs),仍然没有基因组,这阻碍了比较研究。我们为物种组装了第一个 harvestman 草图基因组,该物种具有细长、可抓握的附肢,这得益于许多称为跗节的远端节段。在这里,我们表明 的基因组只有一个 Hox 簇,没有 WGD 的证据。为了研究这个组的典型特征——细长的腿的发育遗传基础,我们研究了 Hox 基因 () 和 ()以及同源物 ()的功能。 的敲低导致两对腿变成触肢的同源转化,最长的腿对的腿节显著缩短,而 L3 的同源性仅在双 敲低时才能实现。 的敲低导致附肢缩短和跗节丢失。昆虫和这种蛛形纲动物中 功能丧失表型谱的相似性表明,EGFR 信号的重复共调控是节肢动物生命之树中超数跗节独立获得的基础。