Department of Biochemistry, University of Otago, Dunedin, New Zealand.
Genomics Aotearoa and Department of Biochemistry, University of Otago, Dunedin, New Zealand.
BMC Ecol Evol. 2021 Aug 4;21(1):154. doi: 10.1186/s12862-021-01885-8.
Conserved syntenic gene complexes are rare in Arthropods and likely only retained due to functional constraint. Numerous sHSPs have been identified in the genomes of insects, some of which are located clustered in close proximity. Previous phylogenetic analyses of these clustered sHSP have been limited to a small number of holometabolous insect species and have not determined the pattern of evolution of the clustered sHSP genes (sHSP-C) in insect or Arthropod lineages.
Using eight genomes from representative insect orders and three non-insect arthropod genomes we have identified that a syntenic cluster of sHSPs (sHSP-C) is a hallmark of most Arthropod genomes. Using 11 genomes from Hymenopteran species our phylogenetic analyses have refined the evolution of the sHSP-C in Hymenoptera and found that the sHSP-C is order-specific with evidence of birth-and-death evolution in the hymenopteran lineage. Finally we have shown that the honeybee sHSP-C is co-ordinately expressed and is marked by genomic features, including H3K27me3 histone marks consistent with coordinate regulation, during honeybee ovary activation.
The syntenic sHSP-C is present in most insect genomes, and its conserved coordinate expression and regulation implies that it is an integral genomic component of environmental response in arthropods.
节肢动物中保守的同线性基因复合物很少见,可能仅因功能约束而保留。在昆虫的基因组中已经鉴定出了许多小分子热休克蛋白(sHSP),其中一些位于紧密聚集的簇中。这些聚集的 sHSP 的先前系统发育分析仅限于少数完全变态昆虫物种,并且尚未确定昆虫或节肢动物谱系中聚集的 sHSP 基因(sHSP-C)的进化模式。
使用来自代表性昆虫目和三种非昆虫节肢动物基因组的八个基因组,我们已经确定了小分子热休克蛋白(sHSP-C)的同线性簇是大多数节肢动物基因组的标志。使用来自膜翅目物种的 11 个基因组,我们的系统发育分析已经细化了膜翅目昆虫中 sHSP-C 的进化,并发现 sHSP-C 是特定于目级的,在膜翅目谱系中存在着生与死的进化证据。最后,我们已经表明,蜜蜂 sHSP-C 是协调表达的,并且具有基因组特征,包括与协调调控一致的 H3K27me3 组蛋白标记,在蜜蜂卵巢激活期间。
同线性 sHSP-C 存在于大多数昆虫基因组中,其保守的协调表达和调控表明它是节肢动物环境反应的一个完整的基因组组成部分。