• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用大规模平行测序技术生成针对人精子细胞的适体。

Generating aptamers towards human sperm cells using massively parallel sequencing.

机构信息

Department of Analytical, Environmental & Forensic Sciences, King's College London, London, SE1 9NH, UK.

School of Life Sciences, The University of Warwick, Coventry, CV4 7AL, UK.

出版信息

Anal Bioanal Chem. 2021 Sep;413(23):5821-5834. doi: 10.1007/s00216-021-03562-7. Epub 2021 Aug 5.

DOI:10.1007/s00216-021-03562-7
PMID:34355252
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8437879/
Abstract

Determining the presence of sperm cells on an item or swab is often a crucial component of sexual offence investigation. However, traditional histological staining techniques used for the morphological identification of spermatozoa lack both specificity and sensitivity, making analysis a complex and time-consuming process. New methods for the detection of sperm cells based on aptamer recognition may be able to overcome these issues. In this work, we present the selection of ssDNA aptamers against human sperm cells using Cell-SELEX and massively parallel sequencing technologies. A total of 14 rounds of selection were performed following a modified Cell-SELEX protocol, which included additional steps for the isolation of spermatozoa from seminal fluid. Massively parallel sequencing using the Illumina Miseq platform was conducted on enriched aptamer pools to elucidate the structure of potential binders. A custom bioinformatics pipeline was also developed using Galaxy for the automated processing of sequencing datasets. This data revealed several promising aptamer candidates, which were shown to selectively bind sperm cells through both microscale thermophoresis and enzyme-linked oligonucleotide assays. These aptamers have the potential to increase the efficiency of sexual offence casework by facilitating sperm detection.

摘要

确定物品或拭子上是否存在精子细胞通常是性犯罪调查的关键组成部分。然而,传统的用于鉴定精子形态的组织学染色技术既缺乏特异性又缺乏敏感性,使得分析成为一个复杂且耗时的过程。基于适配体识别的新方法可能能够克服这些问题。在这项工作中,我们展示了使用 Cell-SELEX 和大规模平行测序技术对人精子细胞进行 ssDNA 适配体选择的方法。在经过修改的 Cell-SELEX 方案的指导下,总共进行了 14 轮选择,该方案包括从精液中分离精子的额外步骤。使用 Illumina Miseq 平台对富集的适配体池进行大规模平行测序,以阐明潜在结合物的结构。还使用 Galaxy 开发了一个自定义的生物信息学管道,用于自动处理测序数据集。该数据揭示了一些有前途的适配体候选物,这些候选物通过微尺度热泳和酶联寡核苷酸测定被证明能够选择性地结合精子细胞。这些适配体有可能通过促进精子检测来提高性犯罪案件工作的效率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/ee4259854aa1/216_2021_3562_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/cab8fe8e02c1/216_2021_3562_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/a8fc4f497e1e/216_2021_3562_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/67ff92c9d300/216_2021_3562_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/87266bf9b0aa/216_2021_3562_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/d953e1bf04a1/216_2021_3562_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/ee4259854aa1/216_2021_3562_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/cab8fe8e02c1/216_2021_3562_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/a8fc4f497e1e/216_2021_3562_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/67ff92c9d300/216_2021_3562_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/87266bf9b0aa/216_2021_3562_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/d953e1bf04a1/216_2021_3562_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ec5c/8437879/ee4259854aa1/216_2021_3562_Fig6_HTML.jpg

相似文献

1
Generating aptamers towards human sperm cells using massively parallel sequencing.利用大规模平行测序技术生成针对人精子细胞的适体。
Anal Bioanal Chem. 2021 Sep;413(23):5821-5834. doi: 10.1007/s00216-021-03562-7. Epub 2021 Aug 5.
2
Screening of DNA Signaling Aptamer from Multiple Candidates Obtained from SELEX with Next-generation Sequencing.利用下一代测序技术从SELEX获得的多个候选物中筛选DNA信号适配体。
Anal Sci. 2019;35(1):113-116. doi: 10.2116/analsci.18SDN05.
3
The Development and Characterisation of ssDNA Aptamers via a Modified Cell-SELEX Methodology for the Detection of Human Red Blood Cells.通过改良的细胞 SELEX 方法开发和鉴定 ssDNA 适体用于检测人红细胞。
Int J Mol Sci. 2024 Feb 2;25(3):1814. doi: 10.3390/ijms25031814.
4
Improvement of Aptamers by High-Throughput Sequencing of Doped-SELEX.高通量测序修饰 SELEX 提高适体的特异性
Methods Mol Biol. 2023;2570:85-102. doi: 10.1007/978-1-0716-2695-5_7.
5
Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing.通过与高通量测序 SELEX 比较验证的二价适体的单步筛选。
PLoS One. 2014 Jun 25;9(6):e100572. doi: 10.1371/journal.pone.0100572. eCollection 2014.
6
HAPIscreen, a method for high-throughput aptamer identification.HAPIscreen,一种高通量适体鉴定方法。
J Nanobiotechnology. 2011 Jun 3;9:25. doi: 10.1186/1477-3155-9-25.
7
High-efficiency selection of aptamers for bovine lactoferrin by capillary electrophoresis and its aptasensor application in milk powder.通过毛细管电泳高效筛选牛乳铁蛋白适体及其在奶粉中的适体传感器应用。
Talanta. 2019 Dec 1;205:120088. doi: 10.1016/j.talanta.2019.06.088. Epub 2019 Jun 27.
8
RAPID-SELEX for RNA aptamers.用于RNA适配体的快速指数富集配体系统进化技术
PLoS One. 2013 Dec 20;8(12):e82667. doi: 10.1371/journal.pone.0082667. eCollection 2013.
9
Aptamer selection by high-throughput sequencing and informatic analysis.高通量测序和信息学分析的适体选择。
Biotechniques. 2011 Dec;51(6):413-6. doi: 10.2144/000113786.
10
Advancements in Aptamer Discovery Technologies.适体发现技术的进展。
Acc Chem Res. 2016 Sep 20;49(9):1903-10. doi: 10.1021/acs.accounts.6b00283. Epub 2016 Aug 15.

引用本文的文献

1
Analyzing aptamer structure and interactions: in silico modelling and instrumental methods.分析适配体结构与相互作用:计算机模拟建模及仪器方法
Biophys Rev. 2024 Nov 20;16(6):685-700. doi: 10.1007/s12551-024-01252-z. eCollection 2024 Dec.
2
Enhancing Target Detection: A Fluorescence-Based Streptavidin-Bead Displacement Assay.增强目标检测:基于荧光的链霉亲和素珠置换分析。
Biosensors (Basel). 2024 Oct 17;14(10):509. doi: 10.3390/bios14100509.
3
DNA methylation patterns in patients with asthenospermia and oligoasthenospermia.弱精症和少精症患者的 DNA 甲基化模式。

本文引用的文献

1
Forensic Spermatozoa Detection.法医精子检测
Am J Forensic Med Pathol. 2019 Dec;40(4):304-311. doi: 10.1097/PAF.0000000000000517.
2
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Galaxy 平台:用于可访问、可重复和协作的生物医学分析:2018 年更新。
Nucleic Acids Res. 2018 Jul 2;46(W1):W537-W544. doi: 10.1093/nar/gky379.
3
Sperm cell purification from mock forensic swabs using SOMAmer™ affinity reagents.使用 SOMAmer™ 亲和试剂从模拟法医拭子中纯化精子细胞。
BMC Genomics. 2024 Jun 17;25(1):602. doi: 10.1186/s12864-024-10491-z.
4
The Development and Characterisation of ssDNA Aptamers via a Modified Cell-SELEX Methodology for the Detection of Human Red Blood Cells.通过改良的细胞 SELEX 方法开发和鉴定 ssDNA 适体用于检测人红细胞。
Int J Mol Sci. 2024 Feb 2;25(3):1814. doi: 10.3390/ijms25031814.
5
On the Identification of Body Fluids and Tissues: A Crucial Link in the Investigation and Solution of Crime.论体液和组织的鉴定:犯罪侦查和解决中的关键环节。
Genes (Basel). 2021 Oct 28;12(11):1728. doi: 10.3390/genes12111728.
Forensic Sci Int Genet. 2018 Jul;35:9-13. doi: 10.1016/j.fsigen.2018.03.011. Epub 2018 Mar 27.
4
Applications of High-Throughput Sequencing for In Vitro Selection and Characterization of Aptamers.高通量测序在适体的体外筛选与表征中的应用
Pharmaceuticals (Basel). 2016 Dec 10;9(4):76. doi: 10.3390/ph9040076.
5
Small-Molecule Binding Aptamers: Selection Strategies, Characterization, and Applications.小分子结合适体:选择策略、表征及应用。
Front Chem. 2016 May 10;4:14. doi: 10.3389/fchem.2016.00014. eCollection 2016.
6
Improvement of bovine semen quality by removal of membrane-damaged sperm cells with DNA aptamers and magnetic nanoparticles.通过使用DNA适配体和磁性纳米颗粒去除膜损伤精子细胞来提高牛精液质量。
J Biotechnol. 2016 Jul 10;229:33-41. doi: 10.1016/j.jbiotec.2016.05.008. Epub 2016 May 7.
7
How to measure the affinity of aptamers for membrane proteins expressed on the surface of living adherent cells.如何测量适体与贴壁活细胞表面表达的膜蛋白之间的亲和力。
Methods. 2016 Mar 15;97:35-43. doi: 10.1016/j.ymeth.2015.11.011. Epub 2015 Nov 14.
8
Aptamer Binding Studies Using MicroScale Thermophoresis.使用微量热泳动技术的适配体结合研究
Methods Mol Biol. 2016;1380:99-111. doi: 10.1007/978-1-4939-3197-2_8.
9
General, Label-Free Method for Determining K(d) and Ligand Concentration Simultaneously.通用的、无需标记的方法,用于同时确定 K(d) 和配体浓度。
Anal Chem. 2015 Dec 1;87(23):11755-62. doi: 10.1021/acs.analchem.5b03069. Epub 2015 Nov 13.
10
Analyzing HT-SELEX data with the Galaxy Project tools--A web based bioinformatics platform for biomedical research.使用银河计划工具分析HT-SELEX数据——一个用于生物医学研究的基于网络的生物信息学平台。
Methods. 2016 Mar 15;97:3-10. doi: 10.1016/j.ymeth.2015.10.008. Epub 2015 Oct 23.