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磷酸葡萄糖异构酶结构揭示了在底物结合时,所选酶亚类的活性位点中存在新的刚性。

phosphoglucose isomerase structures reveal novel rigidity in the active site of a selected subset of enzymes upon substrate binding.

机构信息

York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, UK.

Institute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham B15 2TT, UK.

出版信息

Open Biol. 2021 Aug;11(8):210098. doi: 10.1098/rsob.210098. Epub 2021 Aug 11.

Abstract

Glycolysis and gluconeogenesis are central pathways of metabolism across all domains of life. A prominent enzyme in these pathways is phosphoglucose isomerase (PGI), which mediates the interconversion of glucose-6-phosphate and fructose-6-phosphate. The predatory bacterium leads a complex life cycle, switching between intraperiplasmic replicative and extracellular 'hunter' attack-phase stages. Passage through this complex life cycle involves different metabolic states. Here we present the unliganded and substrate-bound structures of the PGI, solved to 1.74 Å and 1.67 Å, respectively. These structures reveal that an induced-fit conformational change within the active site is not a prerequisite for the binding of substrates in some PGIs. Crucially, we suggest a phenylalanine residue, conserved across most PGI enzymes but substituted for glycine in and other select organisms, is central to the induced-fit mode of substrate recognition for PGIs. This enzyme also represents the smallest conventional PGI characterized to date and probably represents the minimal requirements for a functional PGI.

摘要

糖酵解和糖异生是所有生命领域的代谢中心途径。这些途径中的一种主要酶是磷酸葡萄糖异构酶(PGI),它介导葡萄糖-6-磷酸和果糖-6-磷酸的相互转化。捕食性细菌 经历了一个复杂的生命周期,在周质内复制和细胞外“猎手”攻击阶段之间切换。通过这个复杂的生命周期涉及不同的代谢状态。在这里,我们展示了未配位和底物结合的 PGI 结构,分别解析到 1.74 Å 和 1.67 Å。这些结构表明,在一些 PGIs 中,活性位点内的诱导契合构象变化不是结合底物的前提条件。至关重要的是,我们提出了一个苯丙氨酸残基,它在大多数 PGI 酶中保守,但在 和其他一些选择的生物体中被甘氨酸取代,对于 PGIs 的底物识别的诱导契合模式至关重要。这种酶也是迄今为止表征的最小的常规 PGI,可能代表了功能性 PGI 的最小要求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcaf/8354745/057316681ad1/rsob210098f01.jpg

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