粘蛋白降解菌第三梭菌WC0709的基因组序列草图
Draft Genome Sequence of the Mucin Degrader Clostridium tertium WC0709.
作者信息
Musmeci Eliana, Candeliere Francesco, Amaretti Alberto, Rossi Maddalena, Raimondi Stefano
机构信息
Department of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.
BIOGEST-SITEIA, University of Modena and Reggio Emilia, Modena, Italy.
出版信息
Microbiol Resour Announc. 2021 Aug 12;10(32):e0064221. doi: 10.1128/MRA.00642-21.
Abstract
The draft genome sequence of Clostridium tertium WC0709, a gut bacterium able to use mucin in pure culture as the sole carbon and nitrogen source, is presented here. The genome sequence of will provide valuable references for comparative genome analysis and for studying the relationship with the host.
摘要
本文展示了第三梭菌WC0709的基因组序列草图，该菌是一种肠道细菌，能够在纯培养物中利用粘蛋白作为唯一的碳源和氮源。其基因组序列将为比较基因组分析以及研究与宿主的关系提供有价值的参考。
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2
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3
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Galaxy 平台：用于可访问、可重复和协作的生物医学分析：2018 年更新。
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4
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5
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6
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
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7
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J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
8
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10
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