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新型冠状病毒病(COVID-19)抑制剂的合成与分子对接研究

Synthesis and molecular docking study of novel COVID-19 inhibitors.

作者信息

Gerçek Zuhal, Ceyhan Deniz, Erçağ Erol

机构信息

Department of Chemistry, Faculty of Arts and Sciences, Bülent Ecevit University, Zonguldak Turkey.

Department of Chemistry, Faculty of Art and Science, Tekirdağ Namık Kemal University, Tekirdağ Turkey.

出版信息

Turk J Chem. 2021 Jun 30;45(3):704-718. doi: 10.3906/kim-2012-25. eCollection 2021.

Abstract

In 2020, the world tried to combat the corona virus (COVID-19) pandemic. A proven treatment method specific to Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) is still not found. In this study, seven new antiviral compounds were designed for COVID-19 treatment. The ability of these compounds to inhibit COVID-19's RNA processing was calculated by the molecular docking study. It has been observed that the compounds can have high binding affinities especially against NSP12 (between -9.06 and -8.00 kcal/mol). The molecular dynamics simulation of NSP12-ZG 7 complex proved the stability of interaction. The synthesis of two most active molecules was performed by one-pot reaction and characterized by FT-IR, H-NMR, C-NMR, and mass spectroscopy. The compounds presented with their synthesis are inhibitory core structures against SARS-CoV-2 infection.

摘要

2020年,全世界都在努力抗击冠状病毒(COVID-19)大流行。针对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的经证实的治疗方法仍未找到。在本研究中,设计了七种新型抗病毒化合物用于COVID-19治疗。通过分子对接研究计算了这些化合物抑制COVID-19 RNA加工的能力。已经观察到这些化合物可以具有高结合亲和力,特别是对NSP12(在-9.06至-8.00千卡/摩尔之间)。NSP12-ZG 7复合物的分子动力学模拟证明了相互作用的稳定性。通过一锅反应合成了两种活性最高的分子,并通过傅里叶变换红外光谱(FT-IR)、氢核磁共振(H-NMR)、碳核磁共振(C-NMR)和质谱进行了表征。所展示的合成化合物是针对SARS-CoV-2感染的抑制核心结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4fdf/8326476/b493ba96e49e/turkjchem-45-704-fig001.jpg

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