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超越“活化石”:比较基因组学最终能否揭示新特性?

Beyond "living fossils": Can comparative genomics finally reveal novelty?

作者信息

Sanchez Gustavo, Simakov Oleg, S Rokhsar Daniel

机构信息

Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.

Department for Neurosciences and Developmental Biology, University of Vienna, Vienna, Austria.

出版信息

Mol Ecol Resour. 2022 Jan;22(1):9-11. doi: 10.1111/1755-0998.13488. Epub 2021 Aug 28.

DOI:10.1111/1755-0998.13488
PMID:34407301
Abstract

Cephalopods have recently moved into the research focus due to the growing number of sequenced genomes, molecular tools, and laboratory culture (Albertin & Simakov, 2020)⁠. Genome data now allows us to ask how the many known novelties of cephalopod morphology are reflected in their genomes and gene regulation. A crucial gap in this understanding has been the limited information for the Nautilus, the last survivor of a cephalopod lineage that diverged from the highly derived coleoid clade (octopus, squid, cuttlefish) around 400 million years ago. The publication of Nautilus genomes (in this issue of Molecular Ecology [Huang et al., 2021; Zhang et al., 2021])⁠ will help us understand which genetic changes happened when, and ultimately how they contributed to cephalopod evolution.

摘要

由于已测序基因组数量的增加、分子工具的发展以及实验室培养技术的进步,头足类动物最近已成为研究热点(阿尔贝廷和西马科夫,2020年)。基因组数据现在使我们能够探究头足类动物形态学中众多已知的新奇特征是如何在其基因组和基因调控中体现的。在这一认识过程中,一个关键的空白在于对鹦鹉螺的了解有限,鹦鹉螺是头足类动物谱系的最后幸存者,该谱系在约4亿年前从高度特化的鞘亚纲分支(章鱼、鱿鱼、乌贼)中分化出来。鹦鹉螺基因组的发表(本期《分子生态学》[黄等人,2021年;张等人,2021年])将有助于我们了解哪些基因变化在何时发生,以及它们最终如何对头足类动物的进化产生影响。

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Beyond "living fossils": Can comparative genomics finally reveal novelty?超越“活化石”:比较基因组学最终能否揭示新特性?
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Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization.通过大规模基因组重排产生新型头足类基因调控和表达。
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Mitochondrial genome structure and evolution in the living fossil vampire squid, Vampyroteuthis infernalis, and extant cephalopods.活化石吸血鬼乌贼(Vampyroteuthis infernalis)及现存头足类动物的线粒体基因组结构与进化
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The octopus genome and the evolution of cephalopod neural and morphological novelties.章鱼基因组与头足类动物神经和形态新奇特征的进化
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Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution.分子钟表明现代头足类软体动物在中生代海洋革命期间的更替和多样化。
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Genomic insights into the adaptation and evolution of the nautilus, an ancient but evolving "living fossil".对鹦鹉螺这种古老但仍在进化的“活化石”的适应与进化的基因组学洞察。
Mol Ecol Resour. 2022 Jan;22(1):15-27. doi: 10.1111/1755-0998.13439. Epub 2021 Jun 26.
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The hemocyanin from a living fossil, the cephalopod Nautilus pompilius: protein structure, gene organization, and evolution.来自活化石——头足类动物鹦鹉螺的血蓝蛋白:蛋白质结构、基因组织与进化。
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Front Genet. 2022 Mar 14;13:793734. doi: 10.3389/fgene.2022.793734. eCollection 2022.

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