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通过共结晶在药理活性二氢嘧啶中卤素与氢键的相互作用:来自晶体结构和能量框架的见解

Interplay of Halogen and Hydrogen Bonding through Co-Crystallization in Pharmacologically Active Dihydropyrimidines: Insights from Crystal Structure and Energy Framework.

作者信息

Bairagi Keshab M, Ingle Kapil S, Bhowal Rohit, Mohurle Smital A, Hasija Avantika, Alwassil Osama I, Venugopala Katharigatta N, Chopra Deepak, Nayak Susanta K

机构信息

Department of Chemistry, Institution Visvesvaraya National Institute of Technology, Nagpur Address Nagpur, 440010, Maharashtra, India.

Department of Chemistry, Institution Indian Institute of Science Education and Research Bhopal Address Bhopal, Bhauri, Bhopal 462023, India.

出版信息

Chempluschem. 2021 Aug;86(8):1167-1176. doi: 10.1002/cplu.202100259.

Abstract

A solvent-assisted grinding method has been used to prepare co-crystals in substituted dihydropyrimidines (DHPM) that constitutes pharmacologically active compounds. These were characterized using FT-IR, PXRD, and single-crystal X-ray diffraction. In order to explore the possibility of formation of halogen (XB) and hydrogen bonding (HB) synthons in the solid state, co-crystallization attempts of differently substituted DHPM molecules, containing nitro, hydoxy, and chloro substituents, with different co-formers, such as 1,4-diiodo tetrafluorobenzene (1,4 DITFB) and 3-nitrobenzoic acid (3 NBA) were performed. The XB co-crystals (C2aXB, C2bXB, and C2cXB) prefer the formation of C-I⋅⋅⋅O/C-I⋅⋅⋅S XB synthon, whereas the HB co-crystal (C2dHB) is stabilized by N-H⋅⋅⋅O H-bond formation. Hirshfeld surface analysis revealed that the percentage contribution of intermolecular interactions for XB co-crystals prefer equal contribution of XB synthon along with HB synthon. Furthermore, the interaction energy was analyzed using energy frameworks, which suggests that their stability, a combination of electrostatics and dispersion, is enhanced through XB/HB in comparison to the parent DHPMs.

摘要

一种溶剂辅助研磨法已被用于制备构成药理活性化合物的取代二氢嘧啶(DHPM)共晶体。使用傅里叶变换红外光谱(FT-IR)、粉末X射线衍射(PXRD)和单晶X射线衍射对这些共晶体进行了表征。为了探索在固态中形成卤素键(XB)和氢键(HB)合成子的可能性,进行了不同取代的含硝基、羟基和氯取代基的DHPM分子与不同共形成物(如1,4-二碘四氟苯(1,4 DITFB)和3-硝基苯甲酸(3 NBA))的共结晶尝试。XB共晶体(C2aXB、C2bXB和C2cXB)倾向于形成C-I⋅⋅⋅O/C-I⋅⋅⋅S XB合成子,而HB共晶体(C2dHB)通过N-H⋅⋅⋅O氢键的形成而稳定。 Hirshfeld表面分析表明,XB共晶体分子间相互作用的百分比贡献倾向于XB合成子和HB合成子的同等贡献。此外,使用能量框架分析了相互作用能,这表明与母体DHPM相比,它们通过XB/HB增强了稳定性,即静电和色散的组合。

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