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机器学习和化学成像技术在酶固定化生物催化中的应用

Machine Learning and Chemical Imaging to Elucidate Enzyme Immobilization for Biocatalysis.

机构信息

Analytical Research & Development, MRL, Merck & Co., Inc., West Point, Pennsylvania 19486, United States.

出版信息

Anal Chem. 2021 Sep 7;93(35):11973-11981. doi: 10.1021/acs.analchem.1c01909. Epub 2021 Aug 24.

DOI:10.1021/acs.analchem.1c01909
PMID:34428014
Abstract

Biocatalysis has rapidly become an essential tool in the scientific and industrial communities for the development of efficient, safe, and sustainable chemical syntheses. Immobilization of the biocatalyst, typically an engineered enzyme, offers significant advantages, including increased enzyme stability and control, resistance to environmental change, and enhanced reusability. Determination and optimization of the spatial and chemical distribution of immobilized enzymes are critical for proper functionality; however, analytical methods currently employed for doing so are frequently inadequate. Machine learning, in the form of multivariate curve resolution, with Raman hyperspectral imaging is presented herein as a potential method for investigating the spatial and chemical distribution of evolved pantothenate kinase immobilized onto two diverse, microporous resins. An exhaustive analysis indicates that this method can successfully resolve, both spatially and spectrally, all chemical species involved in enzyme immobilization, including the enzyme, both resins, and other key components. Quantitation of the spatial coverage of immobilized enzymes, a key parameter used for process development, was accomplished. Optimal analytical parameters were determined by the evaluation of different excitation wavelengths. Exploratory chemometric approaches, including principal component analysis, were utilized to investigate the chemical species embedded within the data sets and their relationships. The totality of this information can be utilized for an enhanced understanding of enzyme immobilization processes and can allow for the further implementation of biocatalysis within the scientific and pharmaceutical communities.

摘要

生物催化在科学和工业界迅速成为开发高效、安全和可持续化学合成的重要工具。固定化生物催化剂,通常是经过工程改造的酶,具有显著的优势,包括增加酶的稳定性和可控性、对环境变化的抵抗力以及增强的可重复使用性。确定和优化固定化酶的空间和化学分布对于其正常功能至关重要;然而,目前用于此目的的分析方法常常不够充分。本文提出了一种基于多元曲线分辨的拉曼高光谱成像的机器学习方法,用于研究固定化进化泛酸激酶在两种不同的微孔树脂上的空间和化学分布。详尽的分析表明,该方法可以成功地在空间和光谱上解析酶固定化过程中涉及的所有化学物质,包括酶、两种树脂和其他关键成分。通过对不同激发波长的评估,确定了定量测定固定化酶空间覆盖度的最佳分析参数,这是用于工艺开发的关键参数。利用主成分分析等探索性化学计量学方法,研究了数据集内嵌入的化学物质及其关系。这些信息的总和可用于增强对酶固定化过程的理解,并可进一步在科学和制药界实施生物催化。

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引用本文的文献

1
Modernized Machine Learning Approach to Illuminate Enzyme Immobilization for Biocatalysis.用于阐明生物催化中酶固定化的现代化机器学习方法。
ACS Cent Sci. 2023 Sep 27;9(10):1913-1926. doi: 10.1021/acscentsci.3c00757. eCollection 2023 Oct 25.
2
Machine Learning for Prediction, Classification, and Identification of Immobilized Enzymes for Biocatalysis.机器学习在固定化酶生物催化中的预测、分类和鉴定中的应用。
Pharm Res. 2023 Jun;40(6):1479-1490. doi: 10.1007/s11095-022-03457-x. Epub 2023 Jan 18.
3
Bioprospecting of microbial enzymes: current trends in industry and healthcare.
微生物酶的生物勘探:行业和医疗保健的当前趋势。
Appl Microbiol Biotechnol. 2022 Mar;106(5-6):1813-1835. doi: 10.1007/s00253-022-11859-5. Epub 2022 Mar 7.