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用于(恰加斯病)检测的滤纸干血斑中哺乳动物全血DNA提取方法的优化

Optimization of DNA Extraction from Field-Collected Mammalian Whole Blood on Filter Paper for (Chagas Disease) Detection.

作者信息

Gulas-Wroblewski Bonnie E, Kairis Rebecca B, Gorchakov Rodion, Wheless Anna, Murray Kristy O

机构信息

Department of Pediatrics, Section of Pediatric Tropical Medicine, National School of Tropical Medicine, Baylor College of Medicine and Texas Children's Hospital, Houston, TX 77030, USA.

Texas A&M Natural Resources Institute, College Station, TX 77843, USA.

出版信息

Pathogens. 2021 Aug 17;10(8):1040. doi: 10.3390/pathogens10081040.

Abstract

Blood filter paper strips are cost-effective materials used to store body fluid specimens under challenging field conditions, extending the reach of zoonotic pathogen surveillance and research. We describe an optimized procedure for the extraction of parasite DNA from whole blood (WB) stored on Type I Advantec Nobuto strips from both experimentally spiked and field-collected specimens from canine and skunks, respectively. When comparing two commercial kits for extraction, Qiagen's DNeasy Blood & Tissue Kit performed best for the detection of parasite DNA by PCR from -spiked canine WB samples on Nobuto strips. To further optimize recovery of β-actin from field-collected skunk WB archived on Nobuto strips, we modified the extraction procedures for the Qiagen kit with a 90 °C incubation step and extended incubation post-addition of proteinase K, a method subsequently employed to identify a . infection in one of the skunks. Using this optimized extraction method can efficaciously increase the accuracy and precision of future molecular epidemiologic investigations targeting neglected tropical diseases in field-collected WB specimens on filter strips.

摘要

血滤纸条是一种经济高效的材料,用于在具有挑战性的野外条件下储存体液样本,从而扩大人畜共患病原体监测和研究的范围。我们描述了一种优化的程序,用于从分别存储在I型Advantec Nobuto纸条上的实验性加样和野外采集的犬类和臭鼬全血(WB)中提取寄生虫DNA。在比较两种用于提取的商业试剂盒时,Qiagen的DNeasy Blood & Tissue试剂盒在通过PCR从Nobuto纸条上的加样犬类WB样本中检测寄生虫DNA方面表现最佳。为了进一步优化从存储在Nobuto纸条上的野外采集的臭鼬WB中回收β-肌动蛋白,我们对Qiagen试剂盒的提取程序进行了修改,增加了一个90°C孵育步骤,并在加入蛋白酶K后延长孵育时间,该方法随后被用于鉴定其中一只臭鼬的 感染。使用这种优化的提取方法可以有效地提高未来针对滤纸条上野外采集的WB样本中被忽视的热带病进行分子流行病学调查的准确性和精确性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6565/8398220/6fb831b7db1b/pathogens-10-01040-g001.jpg

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