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全基因组 CRISPR/Cas9 筛选揭示了宿主神经酰胺合成酶 1 对伪狂犬病病毒突变株 gDPass 感染的需求。

A Genome-Wide CRISPR/Cas9 Screen Reveals the Requirement of Host Sphingomyelin Synthase 1 for Infection with Pseudorabies Virus Mutant gDPass.

机构信息

Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, 17493 Greifswald, Insel Riems, Germany.

The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK.

出版信息

Viruses. 2021 Aug 9;13(8):1574. doi: 10.3390/v13081574.

Abstract

Herpesviruses are large DNA viruses, which encode up to 300 different proteins including enzymes enabling efficient replication. Nevertheless, they depend on a multitude of host cell proteins for successful propagation. To uncover cellular host factors important for replication of pseudorabies virus (PrV), an alphaherpesvirus of swine, we performed an unbiased genome-wide CRISPR/Cas9 forward screen. To this end, a porcine CRISPR-knockout sgRNA library (SsCRISPRko.v1) targeting 20,598 genes was generated and used to transduce porcine kidney cells. Cells were then infected with either wildtype PrV (PrV-Ka) or a PrV mutant (PrV-gDPass) lacking the receptor-binding protein gD, which regained infectivity after serial passaging in cell culture. While no cells survived infection with PrV-Ka, resistant cell colonies were observed after infection with PrV-gDPass. In these cells, sphingomyelin synthase 1 (SMS1) was identified as the top hit candidate. Infection efficiency was reduced by up to 90% for PrV-gDPass in rabbit RK13-sgms1 cells compared to wildtype cells accompanied by lower viral progeny titers. Exogenous expression of SMS1 partly reverted the entry defect of PrV-gDPass. In contrast, infectivity of PrV-Ka was reduced by 50% on the knockout cells, which could not be restored by exogenous expression of SMS1. These data suggest that SMS1 plays a pivotal role for PrV infection, when the gD-mediated entry pathway is blocked.

摘要

疱疹病毒是大型 DNA 病毒,可编码多达 300 种不同的蛋白质,包括使有效复制成为可能的酶。然而,它们的成功繁殖依赖于大量宿主细胞蛋白。为了揭示对伪狂犬病病毒(PrV)复制至关重要的细胞宿主因素,我们进行了一项无偏基因组范围的 CRISPR/Cas9 正向筛选。为此,我们生成了一个针对 20598 个基因的猪 CRISPR 敲除 sgRNA 文库(SsCRISPRko.v1),并用于转导猪肾细胞。然后用野生型 PrV(PrV-Ka)或缺乏受体结合蛋白 gD 的 PrV 突变体(PrV-gDPass)感染这些细胞,gD 蛋白缺失后在细胞培养中连续传代后恢复感染性。虽然没有细胞在 PrV-Ka 感染后存活,但在用 PrV-gDPass 感染后观察到了具有抗性的细胞集落。在这些细胞中,鉴定出鞘磷脂合酶 1(SMS1)是最显著的候选物。与野生型细胞相比,PrV-gDPass 在兔 RK13-sgms1 细胞中的感染效率降低了 90%,同时病毒滴度也降低。SMS1 的外源性表达部分恢复了 PrV-gDPass 的进入缺陷。相比之下,在敲除细胞中,PrV-Ka 的感染性降低了 50%,而外源性表达 SMS1 并不能恢复其感染性。这些数据表明,当 gD 介导的进入途径被阻断时,SMS1 在 PrV 感染中起着关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/919e/8402627/196ce79ebb05/viruses-13-01574-g001.jpg

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