Flores-Holguín Norma, Frau Juan, Glossman-Mitnik Daniel
Laboratorio Virtual NANOCOSMOS, Departamento de Medio Ambiente y Energía, Centro de Investigación en Materiales Avanzados, Chihuahua, Mexico.
Departament de Química, Universitat de les Illes Balears, Palma de Mallorca, Spain.
Front Chem. 2021 Aug 12;9:708364. doi: 10.3389/fchem.2021.708364. eCollection 2021.
This research presents the outcomes of a computational determination of the chemical reactivity and bioactivity properties of two plant cyclopeptides isolated from Rosaceae through the consideration of Computational Peptidology (CP), a protocol employed previously in the research of similar molecular systems. CP allows the prediction of the global and local descriptors that are the integral foundations of Conceptual Density Functional Theory (CDFT) and which could help in getting in the understanding of the chemical reactivity properties of the two plant cyclopeptides under study, hoping that they could be related to their bioactivity. The methodology based on the Koopmans in DFT (KID) approach and the MN12SX/Def2TZVP/H2O model chemistry has been successfully validated. Various Chemoinformatics tools have been used to improve the process of virtual screening, thus identifying some additional properties of these two plant cyclopeptides connected to their ability to behave as potentially useful drugs. With the further objective of analyzing their bioactivity, the CP protocol is complemented with the estimation of some useful parameters related to pharmacokinetics, their predicted biological targets, and the Absorption, Distribution, Metabolism, Excretion and Toxicity (ADMET) parameters related to the bioavailability of the two plant cyclopeptides under study are also reported.
本研究展示了通过计算肽学(CP)对从蔷薇科分离出的两种植物环肽的化学反应性和生物活性特性进行计算测定的结果,CP是先前在类似分子系统研究中采用的一种方案。CP能够预测作为概念密度泛函理论(CDFT)整体基础的全局和局部描述符,这有助于理解所研究的两种植物环肽的化学反应性特性,期望它们与生物活性相关。基于密度泛函理论中的库普曼斯方法(KID)和MN12SX/Def2TZVP/H2O模型化学的方法已成功得到验证。已使用各种化学信息学工具来改进虚拟筛选过程,从而确定这两种植物环肽与它们作为潜在有用药物的行为能力相关的一些其他特性。为了进一步分析它们的生物活性,CP方案辅以对一些与药代动力学相关的有用参数的估计,还报告了它们预测的生物学靶点以及与所研究的两种植物环肽的生物利用度相关的吸收、分布、代谢、排泄和毒性(ADMET)参数。