School of Biological Sciences, University of Auckland, Auckland 1010, New Zealand.
Ecosystems and Conservation, Manaaki Whenua - Landcare Research Dunedin, Dunedin 9054, New Zealand.
Biol Lett. 2021 Sep;17(9):20210297. doi: 10.1098/rsbl.2021.0297. Epub 2021 Sep 1.
The role of whole-genome duplication (WGD) in facilitating shifts into novel biomes remains unknown. Focusing on two diverse woody plant groups in New Zealand, (Rubiaceae) and (Plantaginaceae), we investigate how biome occupancy varies with ploidy level, and test the hypothesis that WGD increases the rate of biome shifting. Ploidy levels and biome occupancy (forest, open and alpine) were determined for indigenous species in both clades. The distribution of low-ploidy (: 2, : 6) versus high-ploidy (: 4-10, : 12-18) species across biomes was tested statistically. Estimation of the phylogenetic history of biome occupancy and WGD was performed using time-calibrated phylogenies and the R package BioGeoBEARS. Trait-dependent dispersal models were implemented to determine support for an increased rate of biome shifting among high-ploidy lineages. We find support for a greater than random portion of high-ploidy species occupying multiple biomes. We also find strong support for high-ploidy lineages showing a three- to eightfold increase in the rate of biome shifts. These results suggest that WGD promotes ecological expansion into new biomes.
全基因组复制(WGD)在促进向新生物群落转变中的作用尚不清楚。本研究聚焦于新西兰两个不同的木本植物类群(茜草科和车前科),调查生物群落占据度随倍性水平的变化,并检验 WGD 增加生物群落转变速率的假设。我们在两个分支中确定了本地种的倍性水平和生物群落占据度(森林、开阔和高山)。通过统计检验,研究了低倍性(: 2,: 6)与高倍性(: 4-10,: 12-18)物种在生物群落中的分布。使用时间校准的系统发育树和 R 包 BioGeoBEARS 来估计生物群落占据和 WGD 的系统发育历史。实施了基于性状的扩散模型,以确定在高倍性谱系中是否存在生物群落转变速率增加的支持证据。我们发现高倍性物种占据多个生物群落的比例大于随机比例。我们还发现强有力的证据表明,高倍性谱系的生物群落转变速率增加了三到八倍。这些结果表明,WGD 促进了生态向新生物群落的扩张。