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从印度哈里亚纳邦农业土壤中分离出的全基因组测序数据。

Whole genome sequencing data of isolated from agricultural soil of Haryana, India.

作者信息

Mann Avantika, Malik Shikha, Rana J S, Nehra Kiran

机构信息

Department of Biotechnology, Deenbandhu Chottu Ram University of Science and Technology, Murthal, Sonipat, Haryana 131039, India.

出版信息

Data Brief. 2021 Aug 24;38:107311. doi: 10.1016/j.dib.2021.107311. eCollection 2021 Oct.

Abstract

, is a Gram-negative bacterium, which was previously known as . It is present in all environments such as water, soil, air and hospitals; and is an opportunistic pathogen that causes several types of infections. As compared to other clinically important pathogens included in the ESKAPE category (), the pangenome and population structure of is still poorly understood. For the present study, the bacterial sample was isolated from agricultural soils of Haryana, India. With an aim to identify the occurrence of multi-drug resistance genes in the agricultural field soil bacterial isolate, whole genome sequencing (WGS) of the bacteria was performed; and the antibiotic resistance causing genes, along with the genes responsible for other major functions of the cell; and the different Single Nuceotide Polymorphisms (SNPs) and Insertions and deletions (InDels) were identified. The data presented in this manuscript can be reused by researchers as a reference for determining the antibiotic resistance genes that could be present in different bacterial isolates, and it would also help in determination of functions of various other genes present in other genomes of species.

摘要

是一种革兰氏阴性菌,以前被称为 。它存在于水、土壤、空气和医院等所有环境中;是一种机会致病菌,可引起多种类型的感染。与ESKAPE类别()中包含的其他临床重要病原体相比, 的泛基因组和种群结构仍知之甚少。在本研究中,细菌样本是从印度哈里亚纳邦的农业土壤中分离出来的。为了确定农业田间土壤细菌分离株中多药耐药基因的存在情况,对该细菌进行了全基因组测序(WGS);并鉴定了引起抗生素耐药性的基因,以及负责细胞其他主要功能的基因;还鉴定了不同的单核苷酸多态性(SNP)和插入缺失(InDel)。本手稿中呈现的数据可供研究人员重新使用,作为确定不同细菌分离株中可能存在的抗生素耐药基因的参考,也有助于确定 物种其他基因组中存在的各种其他基因的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86bf/8405917/47c2b711cd14/gr1.jpg

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