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全基因组鉴定和验证与桃蚜药剂处理相关的靶基因。

Genome-Wide Identification and Validation of Target Genes Associated with Insecticide Treatment of the Green Peach Aphid, Myzus persicae.

机构信息

Crop Biotechnology Research Group, College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, Australia.

Western Australian State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Perth, WA, Australia.

出版信息

Methods Mol Biol. 2022;2360:119-138. doi: 10.1007/978-1-0716-1633-8_11.

DOI:10.1007/978-1-0716-1633-8_11
PMID:34495512
Abstract

Next-generation sequencing and analyses of whole-genome transcripts can be used to identify genes and potential mechanisms that may be responsible for the development of resistance to insecticides. Such genes can be identified by isolating and sequencing high-quality messenger RNA and identifying differentially expressed genes (DEGs), and gene variants from insecticide-treated and untreated colonies of the Green peach aphid (GPA) or resistant and susceptible GPA populations. Datasets generated would reveal a set of genes whose expression may be associated with the insecticide treatment. The DEGs can then be validated using quantitative PCR assays.

摘要

下一代测序和全基因组转录本分析可用于鉴定可能导致对杀虫剂产生抗性的基因和潜在机制。这些基因可以通过分离和测序高质量的信使 RNA,并从绿桃蚜(GPA)的经杀虫剂处理和未经处理的群体或抗性和敏感的 GPA 群体中鉴定差异表达基因(DEGs)和基因变异来识别。生成的数据集将揭示一组其表达可能与杀虫剂处理相关的基因。然后可以使用定量 PCR 测定法来验证差异表达基因。

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本文引用的文献

1
Transcriptome-based identification and characterization of genes commonly responding to five different insecticides in the diamondback moth, Plutella xylostella.基于转录组的鉴定和特征分析揭示了小菜蛾对五种不同杀虫剂的共同响应基因。
Pestic Biochem Physiol. 2018 Jan;144:1-9. doi: 10.1016/j.pestbp.2017.11.007. Epub 2017 Nov 22.
2
Genotype to phenotype, the molecular and physiological dimensions of resistance in arthropods.从基因型到表型:节肢动物抗性的分子与生理维度
Pestic Biochem Physiol. 2015 Jun;121:61-77. doi: 10.1016/j.pestbp.2015.01.004. Epub 2015 Jan 19.
3
The molecular genetics of insecticide resistance.
杀虫剂抗性的分子遗传学。
Genetics. 2013 Aug;194(4):807-15. doi: 10.1534/genetics.112.141895.