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利用加权基因共表达网络分析鉴定出与老年人多形性胶质母细胞瘤进展相关的四个特定生物标志物。

Four specific biomarkers associated with the progression of glioblastoma multiforme in older adults identified using weighted gene co-expression network analysis.

机构信息

College of Basic Medicine, Guizhou Medical University, Guiyang, Guizhou, China.

Department of Pathology, Guizhou Medical University, Guiyang, Guizhou, China.

出版信息

Bioengineered. 2021 Dec;12(1):6643-6654. doi: 10.1080/21655979.2021.1975980.

DOI:10.1080/21655979.2021.1975980
PMID:34516348
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8806527/
Abstract

Glioblastoma multiforme (GBM) is the most common primary intracranial malignancy in adults. Owing to individual tolerance and tumor heterogeneity, the therapy methods for young adults do not apply to older adults. The present study aimed to identify specific biomarkers for GBM in older adults using weighted gene co-expression network analysis (WGCNA). Gene expression profiles of older adults with GBM were downloaded from The Cancer Genome Atlas (TCGA) and set as a discovery cohort to construct WGCNA. Core genes of clinically significant modules were used to perform functional enrichment, protein-protein interaction, and Pearson correlation analyses. Gene expression profiles of young in TCGA and older GBM patients from our research group were set as verification cohorts for hub gene expression and diagnostic value. Four significant gene modules associated clinically with older adults with GBM were identified, whereas 251 genes were core genes with module membership>0.8 and gene significance>0.2. Ermin (), myelin-associated oligodendrocyte basic protein (), proteolipid protein 1 (), and oligodendrocytic myelin paranodal and inner loop protein () genes had significant relationships with the Karnofsky score (KPS) in older GBM patients. , and had no relationship with KPS in young GBM patients. These genes were upregulated in GBM tissues from older patients with low but not high KPS and had high diagnostic value. In conclusion, , and may serve as specific biomarkers for the progression of GBM in older adults.

摘要

多形性胶质母细胞瘤(GBM)是成人中最常见的原发性颅内恶性肿瘤。由于个体耐受性和肿瘤异质性,年轻人的治疗方法不适用于老年人。本研究旨在通过加权基因共表达网络分析(WGCNA)鉴定老年人 GBM 的特定生物标志物。从癌症基因组图谱(TCGA)下载了老年人 GBM 的基因表达谱,并将其设置为发现队列以构建 WGCNA。具有临床意义的模块的核心基因用于进行功能富集、蛋白质-蛋白质相互作用和 Pearson 相关性分析。TCGA 中年轻的和我们研究小组中老年人 GBM 患者的基因表达谱被设置为用于枢纽基因表达和诊断价值的验证队列。确定了与老年人 GBM 具有临床相关性的四个显著基因模块,而 251 个基因是模块成员>0.8 和基因意义>0.2 的核心基因。Ermin()、髓鞘相关少突胶质细胞碱性蛋白 ()、蛋白脂质蛋白 1 () 和少突胶质细胞髓鞘旁内环蛋白 () 基因与老年 GBM 患者的卡诺夫斯基评分 (KPS) 有显著关系。在年轻的 GBM 患者中,和没有与 KPS 相关。这些基因在 KPS 低而非高的老年 GBM 患者的 GBM 组织中上调,具有高诊断价值。总之,和可能作为老年人 GBM 进展的特定生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/de8ce249a862/KBIE_A_1975980_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/a7ba4010dec3/KBIE_A_1975980_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/7bb662fecd6e/KBIE_A_1975980_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/9670da5bf336/KBIE_A_1975980_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/7b9d5233e7cd/KBIE_A_1975980_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/a29cf26e49f3/KBIE_A_1975980_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/cf93e2dc42d7/KBIE_A_1975980_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/6ef1fa354966/KBIE_A_1975980_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/de8ce249a862/KBIE_A_1975980_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/a7ba4010dec3/KBIE_A_1975980_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/7bb662fecd6e/KBIE_A_1975980_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/9670da5bf336/KBIE_A_1975980_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/7b9d5233e7cd/KBIE_A_1975980_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/a29cf26e49f3/KBIE_A_1975980_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/cf93e2dc42d7/KBIE_A_1975980_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/6ef1fa354966/KBIE_A_1975980_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f386/8806527/de8ce249a862/KBIE_A_1975980_F0008_OC.jpg

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