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基于短时傅里叶变换的深度学习对 2D 拉曼光谱图进行肺部组织的准确诊断。

Accurate diagnosis of lung tissues for 2D Raman spectrogram by deep learning based on short-time Fourier transform.

机构信息

State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China.

Department of Pathology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China.

出版信息

Anal Chim Acta. 2021 Sep 22;1179:338821. doi: 10.1016/j.aca.2021.338821. Epub 2021 Jul 2.

Abstract

Multivariate statistical analysis methods have an important role in spectrochemical analyses to rapidly identify and diagnose cancer and the subtype. However, utilizing these methods to analyze lager amount spectral data is challenging, and poses a major bottleneck toward achieving high accuracy. Here, a new convolutional neural networks (CNN) method based on short-time Fourier transform (STFT) to diagnose lung tissues via Raman spectra readily is proposed. The models yield that the accuracies of the new method are higher than the conventional methods (principal components analysis -linear discriminant analysis and support vector machine) for validation group (95.2% vs 85.5%, 94.4%) and test group (96.5% vs 90.4%, 93.9%) after cross-validation. The results illustrate that the new method which converts one-dimensional Raman data into two-dimensional Raman spectrograms improve the discriminatory ability of lung tissues and can achieve automatically accurate diagnosis of lung tissues.

摘要

多元统计分析方法在光谱化学分析中具有重要作用,可以快速识别和诊断癌症及其亚型。然而,利用这些方法分析大量的光谱数据具有挑战性,是实现高精度的主要瓶颈。在这里,提出了一种基于短时傅里叶变换(STFT)的新卷积神经网络(CNN)方法,用于通过拉曼光谱快速诊断肺组织。该模型表明,新方法的准确度高于传统方法(主成分分析-线性判别分析和支持向量机),对于验证组(95.2%对 85.5%,94.4%)和测试组(96.5%对 90.4%,93.9%)进行交叉验证后。结果表明,将一维拉曼数据转换为二维拉曼图谱的新方法提高了肺组织的辨别能力,可以实现对肺组织的自动准确诊断。

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