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一个用于在不同尺度上对生物学进行建模的生命周期。

A Life Cycle for Modeling Biology at Different Scales.

作者信息

Harline Kate, Martínez-Gómez Jesús, Specht Chelsea D, Roeder Adrienne H K

机构信息

Section of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, United States.

Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY, United States.

出版信息

Front Plant Sci. 2021 Sep 3;12:710590. doi: 10.3389/fpls.2021.710590. eCollection 2021.

Abstract

Modeling has become a popular tool for inquiry and discovery across biological disciplines. Models allow biologists to probe complex questions and to guide experimentation. Modeling literacy among biologists, however, has not always kept pace with the rise in popularity of these techniques and the relevant advances in modeling theory. The result is a lack of understanding that inhibits communication and ultimately, progress in data gathering and analysis. In an effort to help bridge this gap, we present a blueprint that will empower biologists to interrogate and apply models in their field. We demonstrate the applicability of this blueprint in two case studies from distinct subdisciplines of biology; developmental-biomechanics and evolutionary biology. The models used in these fields vary from summarizing dynamical mechanisms to making statistical inferences, demonstrating the breadth of the utility of models to explore biological phenomena.

摘要

建模已成为跨生物学科进行探究和发现的一种流行工具。模型使生物学家能够探究复杂问题并指导实验。然而,生物学家的建模素养并非总能跟上这些技术的普及程度以及建模理论的相关进展。结果是缺乏理解,这抑制了交流,最终也阻碍了数据收集和分析的进展。为了帮助弥合这一差距,我们提出了一个蓝图,它将使生物学家能够在其领域中审视和应用模型。我们在生物学不同子学科的两个案例研究中展示了该蓝图的适用性;发育生物力学和进化生物学。这些领域中使用的模型从总结动力学机制到进行统计推断各不相同,展示了模型用于探索生物现象的效用广度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85b4/8446664/2390ef681a42/fpls-12-710590-g001.jpg

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