Department of Medical Informatics, University Medical Center Göttingen (UMG), Göttingen, Germany.
Cluster of Excellence "Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells" (MBExC), University of Göttingen, Göttingen, Germany.
Stud Health Technol Inform. 2021 Sep 21;283:59-68. doi: 10.3233/SHTI210542.
Ensuring scientific reproducibility and compliance with documentation guidelines of funding bodies and journals is a topic of greatly increasing importance in biomedical research. Failure to comply, or unawareness of documentation standards can have adverse effects on the translation of research into patient treatments, as well as economic implications. In the context of the German Research Foundation-funded collaborative research center (CRC) 1002, an IT-infrastructure sub-project was designed. Its goal has been to establish standardized metadata documentation and information exchange benefitting the participating research groups with minimal additional documentation efforts.
Implementation of the self-developed menoci-based research data platform (RDP) was driven by close communication and collaboration with researchers as early adopters and experts. Requirements analysis and concept development involved in person observation of experimental procedures, interviews and collaboration with researchers and experts, as well as the investigation of available and applicable metadata standards and tools. The Drupal-based RDP features distinct modules for the different documented data and workflow types, and both the development and the types of collected metadata were continuously reviewed and evaluated with the early adopters.
The menoci-based RDP allows for standardized documentation, sharing and cross-referencing of different data types, workflows, and scientific publications. Different modules have been implemented for specific data types and workflows, allowing for the enrichment of entries with specific metadata and linking to further relevant entries in different modules.
Taking the workflows and datasets of the frequently involved experimental service projects as a starting point for (meta-)data types to overcome irreproducibility of research data, results in increased benefits for researchers with minimized efforts. While the menoci-based RDP with its data models and metadata schema was originally developed in a cardiological context, it has been implemented and extended to other consortia at GÃűttingen Campus and beyond in different life science research areas.
确保科学可重复性和符合资助机构及期刊的文件指南,是生物医学研究中日益重要的议题。不符合规定或不了解文件标准,可能会对研究转化为患者治疗产生负面影响,并带来经济影响。在德国研究基金会资助的合作研究中心(CRC)1002 的背景下,设计了一个 IT 基础设施子项目。其目标是建立标准化的元数据文件,并以最小的额外文件工作,促进参与研究小组的信息交流。
通过与早期采用者和专家密切沟通与合作,推动了自主开发的基于 menoci 的研究数据平台(RDP)的实施。需求分析和概念开发涉及到对实验程序的现场观察、访谈以及与研究人员和专家的合作,同时还调查了可用的和适用的元数据标准和工具。基于 Drupal 的 RDP 具有不同的模块,用于记录不同的数据类型和工作流程,并与早期采用者一起不断审查和评估 RDP 的开发和收集的元数据类型。
基于 menoci 的 RDP 允许对不同的数据类型、工作流程和科学出版物进行标准化的文件记录、共享和交叉引用。不同的模块已针对特定的数据类型和工作流程进行了实施,允许使用特定的元数据丰富条目,并链接到不同模块中的其他相关条目。
以经常涉及的实验服务项目的工作流程和数据集为起点,确定(元)数据类型,以克服研究数据的不可重复性,从而为研究人员带来了更大的收益,同时付出的努力最小化。虽然最初是在心脏病学背景下开发基于 menoci 的 RDP,但它已在哥廷根校区及其他地方的不同生命科学研究领域的其他联盟中实施和扩展。