Mishima Kenji, Shoji Mitsuo, Umena Yasufumi, Boero Mauro, Shigeta Yasuteru
Center for Computational Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8577, Japan.
JST-PRESTO, Kawaguchi, Saitama 332-0012, Japan.
Biophys Physicobiol. 2021 Jul 30;18:196-214. doi: 10.2142/biophysico.bppb-v18.021. eCollection 2021.
In the present study, we provide a reformulation of the theory originally proposed by Förster which allows for simple and convenient formulas useful to estimate the relative contributions of transition dipole moments of a donor and acceptor (chemical factors), their orientation factors (intermolecular structural factors), intermolecular center-to-center distances (intermolecular structural factors), spectral overlaps of absorption and emission spectra (photophysical factors), and refractive index (material factor) to the excitation energy transfer (EET) rate constant. To benchmark their validity, we focused on the EET occurring in C-phycocyanin (C-PC) chromophores. To this aim, we resorted to quantum chemistry calculations to get optimized molecular structures of the C-PC chromophores within the density functional theory (DFT) framework. The absorption and emission spectra, as well as transition dipole moments, were computed by using the time-dependent DFT (TDDFT). Our method was applied to several types of C-PCs showing that the EET rates are determined by an interplay of their specific physical, chemical, and geometrical features. These results show that our formulas can become a useful tool for a reliable estimation of the relative contributions of the factors regulating the EET transfer rate.
在本研究中,我们对最初由Förster提出的理论进行了重新阐述,得出了简单便捷的公式,可用于估算供体和受体的跃迁偶极矩(化学因素)、它们的取向因子(分子间结构因素)、分子间中心到中心的距离(分子间结构因素)、吸收光谱和发射光谱的光谱重叠(光物理因素)以及折射率(材料因素)对激发能量转移(EET)速率常数的相对贡献。为了检验这些公式的有效性,我们重点研究了C - 藻蓝蛋白(C - PC)发色团中的EET。为此,我们借助量子化学计算,在密度泛函理论(DFT)框架内获得了C - PC发色团的优化分子结构。利用含时密度泛函理论(TDDFT)计算了吸收光谱、发射光谱以及跃迁偶极矩。我们的方法应用于几种类型的C - PC,结果表明EET速率由其特定的物理、化学和几何特征的相互作用决定。这些结果表明,我们的公式可成为可靠估算调节EET转移速率的各因素相对贡献的有用工具。