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体外总DNA转录:一种检测具有类似tRNA结构的高度重复且可转录序列的方法。

Total DNA transcription in vitro: a procedure to detect highly repetitive and transcribable sequences with tRNA-like structures.

作者信息

Endoh H, Okada N

出版信息

Proc Natl Acad Sci U S A. 1986 Jan;83(2):251-5. doi: 10.1073/pnas.83.2.251.

DOI:10.1073/pnas.83.2.251
PMID:3455763
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC322835/
Abstract

Total DNAs from various animals were transcribed in vitro in a HeLa cell extract, and it was found that one to several discrete RNAs were transcribed by RNA polymerase III. With tortoise (Geoclemys reevessi) and newt (Cynops pyrrhogaster), distinct 6.5S and 8S RNAs were transcribed from these respective DNAs. Representative phage clones carrying the 6.5S and 8S RNA genes were isolated from genomic libraries of these animals, and the sequences of these genes were determined. The 5' parts of highly repetitive and transcribable sequences of tortoise and newt were found to have close resemblance to tRNALys1 (rabbit) gene (78% homology) and a tRNAGlu (Drosophila) gene (74% homology, not counting the aminoacyl stem region), respectively. The homologies extended to secondary structures, homologous nucleotides being located on similar secondary structures. It is proposed that many, if not all, highly repetitive and transcribable sequences detected by total DNA transcription have specific tRNA genes as their progenitors.

摘要

从各种动物中提取的总DNA在HeLa细胞提取物中进行体外转录,结果发现RNA聚合酶III转录出了一到几种离散的RNA。对于乌龟(中华草龟)和蝾螈(东方蝾螈),分别从它们各自的DNA转录出了独特的6.5S和8S RNA。从这些动物的基因组文库中分离出携带6.5S和8S RNA基因的代表性噬菌体克隆,并测定了这些基因的序列。发现乌龟和蝾螈高度重复且可转录序列的5'部分分别与tRNALys1(兔)基因(78%同源性)和tRNAGlu(果蝇)基因(74%同源性,不包括氨酰基茎区)有密切相似性。这种同源性延伸到二级结构,同源核苷酸位于相似的二级结构上。有人提出,通过总DNA转录检测到的许多(如果不是全部)高度重复且可转录的序列都以特定的tRNA基因为其祖先。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3192/322835/da776bdc77f0/pnas00306-0061-e.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3192/322835/7dffc6191b94/pnas00306-0061-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3192/322835/6ba68082eef8/pnas00306-0061-d.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3192/322835/da776bdc77f0/pnas00306-0061-e.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3192/322835/7dffc6191b94/pnas00306-0061-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3192/322835/6ba68082eef8/pnas00306-0061-d.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3192/322835/da776bdc77f0/pnas00306-0061-e.jpg

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1
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Proc Natl Acad Sci U S A. 1980 Dec;77(12):7132-6. doi: 10.1073/pnas.77.12.7132.
2
DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract.腺病毒基因在可溶性全细胞提取物中的DNA依赖性转录。
Proc Natl Acad Sci U S A. 1980 Jul;77(7):3855-9. doi: 10.1073/pnas.77.7.3855.
3
The leader mRNA of the histidine attenuator region resembles tRNAHis: possible general regulatory implications.
脊椎动物基因组中转座元件的进化与多样性
Genome Biol Evol. 2017 Jan 1;9(1):161-177. doi: 10.1093/gbe/evw264.
4
5S-rRNA genes in rice embryos.水稻胚胎中的 5S-rRNA 基因。
Plant Mol Biol. 1987 Sep;9(5):443-51. doi: 10.1007/BF00015876.
5
RNA-Mediated Gene Duplication and Retroposons: Retrogenes, LINEs, SINEs, and Sequence Specificity.RNA介导的基因复制与逆转座子:反转录基因、长散在核元件、短散在核元件及序列特异性
Int J Evol Biol. 2013;2013:424726. doi: 10.1155/2013/424726. Epub 2013 Aug 1.
6
Bead-probe complex capture a couple of SINE and LINE family from genomes of two closely related species of East Asian cyprinid directly using magnetic separation.磁珠探针复合物通过磁分离直接从两种东亚鲤科近缘物种的基因组中捕获了一些短散在重复序列(SINE)和长散在重复序列(LINE)家族。
BMC Genomics. 2009 Feb 19;10:83. doi: 10.1186/1471-2164-10-83.
7
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J Mol Evol. 2006 May;62(5):630-44. doi: 10.1007/s00239-005-0201-5. Epub 2006 Apr 11.
8
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J Mol Evol. 1997;44 Suppl 1:S52-6. doi: 10.1007/pl00000058.
9
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Mol Cell Biol. 1996 Jul;16(7):3756-64. doi: 10.1128/MCB.16.7.3756.
10
Evolution of the active sequences of the HpaI short interspersed elements.HpaI短散在元件活性序列的进化
J Mol Evol. 1995 Dec;41(6):986-95. doi: 10.1007/BF00173180.
组氨酸衰减子区域的前导mRNA类似于组氨酸转运RNA:可能具有普遍的调控意义。
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4
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5
SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes.短散在重复序列和长散在重复序列:哺乳动物基因组中高度重复的短散在和长散在序列
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9
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Mol Gen Genet. 1984;194(1-2):1-6. doi: 10.1007/BF00383489.