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MB-Fit:用于数据驱动的多体势能函数的软件基础设施。

MB-Fit: Software infrastructure for data-driven many-body potential energy functions.

作者信息

Bull-Vulpe Ethan F, Riera Marc, Götz Andreas W, Paesani Francesco

机构信息

Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA.

San Diego Supercomputer Center, University of California San Diego, La Jolla, California 92093, USA.

出版信息

J Chem Phys. 2021 Sep 28;155(12):124801. doi: 10.1063/5.0063198.

DOI:10.1063/5.0063198
PMID:34598567
Abstract

Many-body potential energy functions (MB-PEFs), which integrate data-driven representations of many-body short-range quantum mechanical interactions with physics-based representations of many-body polarization and long-range interactions, have recently been shown to provide high accuracy in the description of molecular interactions from the gas to the condensed phase. Here, we present MB-Fit, a software infrastructure for the automated development of MB-PEFs for generic molecules within the TTM-nrg (Thole-type model energy) and MB-nrg (many-body energy) theoretical frameworks. Besides providing all the necessary computational tools for generating TTM-nrg and MB-nrg PEFs, MB-Fit provides a seamless interface with the MBX software, a many-body energy and force calculator for computer simulations. Given the demonstrated accuracy of the MB-PEFs, particularly within the MB-nrg framework, we believe that MB-Fit will enable routine predictive computer simulations of generic (small) molecules in the gas, liquid, and solid phases, including, but not limited to, the modeling of quantum isomeric equilibria in molecular clusters, solvation processes, molecular crystals, and phase diagrams.

摘要

多体势能函数(MB - PEF)将多体短程量子力学相互作用的数据驱动表示与多体极化和长程相互作用的基于物理的表示相结合,最近已被证明在描述从气相到凝聚相的分子相互作用方面具有高精度。在此,我们展示了MB - Fit,这是一种软件基础设施,用于在TTM - nrg(托勒型模型能量)和MB - nrg(多体能量)理论框架内为通用分子自动开发MB - PEF。除了提供生成TTM - nrg和MB - nrg PEF所需的所有计算工具外,MB - Fit还与MBX软件提供无缝接口,MBX软件是用于计算机模拟的多体能量和力计算器。鉴于MB - PEF已证明的准确性,特别是在MB - nrg框架内,我们相信MB - Fit将能够对气相、液相和固相中的通用(小)分子进行常规预测性计算机模拟,包括但不限于分子簇中的量子异构平衡建模、溶剂化过程、分子晶体和相图。

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引用本文的文献

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MBX: A many-body energy and force calculator for data-driven many-body simulations.MBX:用于数据驱动多体模拟的多体能量和力计算器。
J Chem Phys. 2023 Aug 7;159(5). doi: 10.1063/5.0156036.
2
Realistic phase diagram of water from "first principles" data-driven quantum simulations.基于“第一性原理”数据驱动的量子模拟的真实水相图。
Nat Commun. 2023 Jun 8;14(1):3349. doi: 10.1038/s41467-023-38855-1.
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Elevating density functional theory to chemical accuracy for water simulations through a density-corrected many-body formalism.通过密度校正多体形式将密度泛函理论提升至化学精度以用于水的模拟
Nat Commun. 2021 Nov 4;12(1):6359. doi: 10.1038/s41467-021-26618-9.