Department of Neurosurgery, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi Province, China.
Scientific Research Center, East China Institute of Digital Medical Engineering, Shangrao, Jiangxi Province, China.
Bioengineered. 2021 Dec;12(1):7765-7779. doi: 10.1080/21655979.2021.1985340.
Early 2 factor (E2F) genes encoding a family of transcription factors are significantly associated with apoptosis, metabolism, and angiogenesis in several tumor types. However, the biological functions of E2F transcription factors (E2Fs) and their potential involvement in the malignancy of lower-grade glioma (LGG) remain unclear. We explored the effects of the expression of eight E2F family members on the clinical characteristics of LGG based on the Chinese Glioma Genome Atlas (CGGA), The Cancer Genome Atlas (TCGA), and GSE16011 datasets. Two LGG subgroups were identified according to the consensus clustering of the eight E2Fs. We employed the least absolute shrinkage and selection operator (LASSO) Cox regression algorithm for further functional experiments and the development of a potential risk score. Two categories of patients with LGG were identified based on the median risk scores. We then developed a nomogram based on the results of the multivariate analysis. Real-time quantitative polymerase chain reaction (RT-qPCR) and immunohistochemistry were performed to validate the bioinformatics results. Our results indicated that E2F family members were significantly involved in the malignancy of LGG and might serve as effective prognostic biomarkers of the disease.
早期 2 因子(E2F)基因编码转录因子家族与多种肿瘤类型的细胞凋亡、代谢和血管生成密切相关。然而,E2F 转录因子(E2Fs)的生物学功能及其在低级别胶质瘤(LGG)恶性程度中的潜在作用尚不清楚。我们基于中国脑胶质瘤基因组图谱(CGGA)、癌症基因组图谱(TCGA)和 GSE16011 数据集,探讨了 8 种 E2F 家族成员的表达对 LGG 临床特征的影响。根据 8 种 E2Fs 的共识聚类,将两个 LGG 亚组进行了鉴定。我们采用最小绝对值收缩和选择算子(LASSO)Cox 回归算法进行了进一步的功能实验和潜在风险评分的开发。基于中位风险评分,将 LGG 患者分为两类。然后,我们根据多变量分析的结果开发了一个列线图。实时定量聚合酶链反应(RT-qPCR)和免疫组织化学用于验证生物信息学结果。我们的研究结果表明,E2F 家族成员在 LGG 的恶性程度中具有显著的作用,可能作为该疾病有效的预后生物标志物。