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单细胞蛋白质组学:精准医学的可行方法。

Single-Tear Proteomics: A Feasible Approach to Precision Medicine.

机构信息

Materials Science Department, University of Milano-Bicocca, Via R. Cozzi 55, 20125 Milan, Italy.

Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy.

出版信息

Int J Mol Sci. 2021 Oct 4;22(19):10750. doi: 10.3390/ijms221910750.

Abstract

Lacrimal fluid is an attractive source of noninvasive biomarkers, the main limitation being the small sample amounts typically collected. Advanced analytical methods to allow for proteomics profiling from a few microliters are needed to develop innovative biomarkers, with attractive perspectives of applications to precision medicine. This work describes an effective, analytical pipeline for single-tear analysis by ultrahigh-resolution, shotgun proteomics from 23 healthy human volunteers, leading to high-confidence identification of a total of 890 proteins. Highly reproducible quantification was achieved by either peak intensity, peak area, or spectral counting. Hierarchical clustering revealed a stratification of females vs. males that did not emerge from previous studies on pooled samples. Two subjects were monitored weekly over 3 weeks. The samples clustered by withdrawal time of day (morning vs. afternoon) but not by follow-up week, with elevated levels of components of the immune system in the morning samples. This study demonstrates feasibility of single-tear quantitative proteomics, envisaging contributions of this unconventional body fluid to individualized approaches in biomedicine.

摘要

泪液是一种有吸引力的非侵入性生物标志物来源,主要限制在于通常采集的样本量较小。需要先进的分析方法,以便能够从几微升中进行蛋白质组学分析,从而开发创新的生物标志物,这为精准医学的应用提供了有吸引力的前景。本工作描述了一种有效的单泪分析分析方法,通过超高效分辨率、shotgun 蛋白质组学分析 23 名健康志愿者的单泪,共鉴定到 890 种高可信度蛋白质。通过峰强度、峰面积或谱计数可实现高度可重现的定量。层次聚类显示出女性与男性的分层,而这在以前对混合样本的研究中并未出现。两名受试者每周监测 3 周。根据提取时间(早上或下午)对样本进行聚类,但不以随访周聚类,早上样本中免疫系统成分水平升高。本研究证明了单泪定量蛋白质组学的可行性,预计这种非常规体液将为生物医学中的个体化方法做出贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d0a/8509675/2fdeb584ae1b/ijms-22-10750-g001.jpg

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