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分析ncRNAs的全转录组图谱并预测顺铂耐药宫颈癌细胞系中的竞争性内源性RNA网络。

Analyzing the whole-transcriptome profiles of ncRNAs and predicting the competing endogenous RNA networks in cervical cancer cell lines with cisplatin resistance.

作者信息

Lv Huimin, Jin Shanshan, Zou Binbin, Liang Yuxiang, Xie Jun, Wu Suhui

机构信息

Department of Obstetrics and Gynecology, Third Hospital of Shanxi Medical University (Shanxi Bethune Hospital), Shanxi Academy of Medical Sciences, TaiYuan, 030032, China.

Shanxi Key Laboratory of Birth Defect and Cell Regeneration, Shanxi Medical University, TaiYuan, 030001, China.

出版信息

Cancer Cell Int. 2021 Oct 12;21(1):532. doi: 10.1186/s12935-021-02239-6.

Abstract

BACKGROUND

Cervical cancer (CC) is one of the most common malignant tumors in women. In order to identify the functional roles and the interaction between mRNA and non-coding RNA (ncRNA, including lncRNA, circRNA and miRNA) in CC cisplatin (DDP) resistance, the transcription profile analysis was performed and a RNA regulatory model of CC DDP resistance was proposed.

METHODS

In this study, whole-transcriptome sequencing analysis was conducted to study the ncRNA and mRNA profiles of parental SiHa cells and DDP resistant SiHa/DDP cells. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were performed for pathway analysis based on the selected genes with significant differences in expression. Subsequently, ceRNA network analyses were conducted using the drug resistance-related genes and signal-transduction pathways by Cytoscape software. Furthermore, a ceRNA regulatory pathway, namely lncRNA-AC010198.2/hsa-miR-34b-3p/STC2, was selected by RT-qPCR validation and literature searching. Further validation was done by both dual-luciferase reporter gene assays and RNA pull-down assays. Besides that, the changes in gene expression and biological function were further studied by performing si-AC010198.2 transfection and DDP resistance analyses in the SiHa and SiHa/DDP cells, respectively.

RESULTS

Using bioinformatics and dual-luciferase reporter gene analyses, we found that AC010198.2/miR-34b-3p/STC2 may be a key pathway for DDP resistance in CC cells. Significant differences in both downstream gene expression and the biological function assays including colony formation, migration efficiency and cell apoptosis were identified in AC010198.2 knockdown cells.

CONCLUSIONS

Our study will not only provide new markers and potential mechanism models for CC DDP resistance, but also discover novel targets for attenuating it.

摘要

背景

宫颈癌(CC)是女性最常见的恶性肿瘤之一。为了确定mRNA与非编码RNA(ncRNA,包括lncRNA、circRNA和miRNA)在CC顺铂(DDP)耐药中的功能作用及相互作用,进行了转录谱分析并提出了CC DDP耐药的RNA调控模型。

方法

本研究进行了全转录组测序分析,以研究亲本SiHa细胞和DDP耐药SiHa/DDP细胞的ncRNA和mRNA谱。基于表达有显著差异的选定基因进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路分析。随后,使用Cytoscape软件对耐药相关基因和信号转导通路进行ceRNA网络分析。此外,通过RT-qPCR验证和文献检索选择了一条ceRNA调控通路,即lncRNA-AC010198.2/hsa-miR-34b-3p/STC2。通过双荧光素酶报告基因检测和RNA下拉检测进行进一步验证。除此之外,分别在SiHa和SiHa/DDP细胞中进行si-AC010198.2转染和DDP耐药分析,进一步研究基因表达和生物学功能的变化。

结果

通过生物信息学和双荧光素酶报告基因分析,我们发现AC010198.2/miR-34b-3p/STC2可能是CC细胞中DDP耐药的关键通路。在AC010198.2敲低的细胞中,下游基因表达以及包括集落形成、迁移效率和细胞凋亡在内的生物学功能检测均存在显著差异。

结论

我们的研究不仅将为CC DDP耐药提供新的标志物和潜在机制模型,还将发现减轻其耐药性的新靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21a6/8513283/efc0e543983a/12935_2021_2239_Fig1_HTML.jpg

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