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单细胞 RNA 测序技术在 T 细胞发育研究中的应用

Single-Cell RNA Sequencing Approaches for Tracing T Cell Development.

机构信息

St. Vincent's Institute of Medical Research, Fitzroy, Victoria, Australia.

Department of Medicine (St. Vincent's), The University of Melbourne, Fitzroy, Victoria, Australia.

出版信息

J Immunol. 2021 Jul 15;207(2):363-370. doi: 10.4049/jimmunol.2100408.

DOI:10.4049/jimmunol.2100408
PMID:34644259
Abstract

T cell development occurs in the thymus, where uncommitted progenitors are directed into a range of sublineages with distinct functions. The goal is to generate a TCR repertoire diverse enough to recognize potential pathogens while remaining tolerant of self. Decades of intensive research have characterized the transcriptional programs controlling critical differentiation checkpoints at the population level. However, greater precision regarding how and when these programs orchestrate differentiation at the single-cell level is required. Single-cell RNA sequencing approaches are now being brought to bear on this question, to track the identity of cells and analyze their gene expression programs at a resolution not previously possible. In this review, we discuss recent advances in the application of these technologies that have the potential to yield unprecedented insight to T cell development.

摘要

T 细胞发育发生在胸腺中,未成熟的祖细胞在那里被定向分化为具有不同功能的一系列亚群。其目的是产生多样性足够的 TCR 库,以识别潜在的病原体,同时保持对自身的耐受性。数十年的深入研究已经描述了控制群体水平关键分化检查点的转录程序。然而,需要更高的精度来确定这些程序如何以及何时在单细胞水平上协调分化。单细胞 RNA 测序方法现在正在解决这个问题,以跟踪细胞的身份,并以以前不可能的分辨率分析它们的基因表达程序。在这篇综述中,我们讨论了这些技术的最新应用进展,这些进展有可能为 T 细胞发育提供前所未有的深入见解。

相似文献

1
Single-Cell RNA Sequencing Approaches for Tracing T Cell Development.单细胞 RNA 测序技术在 T 细胞发育研究中的应用
J Immunol. 2021 Jul 15;207(2):363-370. doi: 10.4049/jimmunol.2100408.
2
A Single-Cell Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and Developmental Maturation.胸腺器官发生的单细胞转录组图谱解析细胞类型和发育成熟。
Immunity. 2018 Jun 19;48(6):1258-1270.e6. doi: 10.1016/j.immuni.2018.04.015. Epub 2018 Jun 5.
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Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos.单细胞 RNA 测序解析人类胚胎前胸腺淋巴祖细胞和胸腺器官发生的时空发育。
Immunity. 2019 Nov 19;51(5):930-948.e6. doi: 10.1016/j.immuni.2019.09.008. Epub 2019 Oct 8.
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Zoned out: functional mapping of stromal signaling microenvironments in the thymus.注意力分散:胸腺中基质信号微环境的功能图谱
Annu Rev Immunol. 2007;25:649-79. doi: 10.1146/annurev.immunol.23.021704.115715.
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The long road to the thymus: the generation, mobilization, and circulation of T-cell progenitors in mouse and man.通向胸腺的漫长之路:小鼠和人类中T细胞祖细胞的产生、动员及循环
Semin Immunopathol. 2008 Dec;30(4):371-82. doi: 10.1007/s00281-008-0133-4. Epub 2008 Oct 17.
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Thymic microenvironments for T cell differentiation and selection.用于T细胞分化和选择的胸腺微环境。
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Selection of the T-cell repertoire: receptor-controlled checkpoints in T-cell development.T细胞库的选择:T细胞发育中的受体控制检查点
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An overview of the intrathymic intricacies of T cell development.胸腺内 T 细胞发育的复杂性概述。
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Medullary thymic epithelial cells: Deciphering the functional diversity beyond promiscuous gene expression.骨髓胸腺上皮细胞:超越混杂基因表达的功能多样性解析。
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引用本文的文献

1
Distinct subpopulations of DN1 thymocytes exhibit preferential γδ T lineage potential.DN1 胸腺细胞中的不同亚群表现出优先的 γδ T 谱系潜能。
Front Immunol. 2023 Apr 3;14:1106652. doi: 10.3389/fimmu.2023.1106652. eCollection 2023.
2
Single-cell transcriptomics uncovers an instructive T-cell receptor role in adult γδ T-cell lineage commitment.单细胞转录组学揭示了指导 T 细胞受体在成人 γδ T 细胞谱系决定中的作用。
EMBO J. 2022 Mar 1;41(5):e110023. doi: 10.15252/embj.2021110023. Epub 2022 Feb 7.