Groß Sebastian, Panter Fabian, Pogorevc Domen, Seyfert Carsten E, Deckarm Selina, Bader Chantal D, Herrmann Jennifer, Müller Rolf
Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research, Saarland University Campus 66123 Saarbrücken Germany
Department of Pharmacy, Saarland University 66123 Saarbrücken Germany.
Chem Sci. 2021 Aug 12;12(35):11882-11893. doi: 10.1039/d1sc02725e. eCollection 2021 Sep 15.
The development of new antibiotics is imperative to fight increasing mortality rates connected to infections caused by multidrug-resistant (MDR) bacteria. In this context, Gram-negative pathogens listed in the WHO priority list are particularly problematic. Darobactin is a ribosomally produced and post-translationally modified bicyclic heptapeptide antibiotic selectively killing Gram-negative bacteria by targeting the outer membrane protein BamA. The native darobactin A producer HGB1456 shows very limited production under laboratory cultivation conditions. Herein, we present the design and heterologous expression of a synthetically engineered darobactin biosynthetic gene cluster (BGC) in to reach an average darobactin A production titre of 13.4 mg L. Rational design of variants, encoding the darobactin precursor peptide with altered core sequences, resulted in the production of 13 new 'non-natural' darobactin derivatives and 4 previously hypothetical natural darobactins. One of the non-natural compounds, darobactin 9, was more potent than darobactin A, and showed significantly improved activity especially against (0.125 μg mL) and (1-2 μg mL). Importantly, it also displayed superior activity against MDR clinical isolates of . (1-2 μg mL) and (1-4 μg mL). Independent deletions of genes from the darobactin BGC showed that only and , encoding a radical forming -adenosyl-l-methionine-dependent enzyme, are required for darobactin formation. Co-expression of two additional genes associated with the BGCs in hypothetical producer strains identified a proteolytic detoxification mechanism as a potential self-resistance strategy in native producers. Taken together, we describe a versatile heterologous darobactin platform allowing the production of unprecedented active derivatives in good yields, and we provide first experimental evidence for darobactin biosynthesis processes.
Microbiol Spectr. 2021-12-22
Angew Chem Int Ed Engl. 2023-1-9
Nature. 2019-11-20
Angew Chem Int Ed Engl. 2025-7-28
Nat Rev Microbiol. 2025-3-27
Chem Rev. 2025-4-9
Nat Chem Biol. 2025-2
Angew Chem Int Ed Engl. 2025-3-3
ACS Infect Dis. 2024-12-13
Molecules. 2024-10-31
J Ind Microbiol Biotechnol. 2021-6-4
Nat Rev Microbiol. 2020-3-9
Nature. 2019-11-20
Nature. 2019-10-23
Proc Natl Acad Sci U S A. 2019-10-7