Chinese Academy of Agricultural Sciences, Qingdao, Shandong, China.
University of Swat, Centre for Biotechnology and Microbiology, Mingora, Swat, Khyber Pukhtunkhwa, Pakistan.
Braz J Biol. 2021 Oct 11;83:e245372. doi: 10.1590/1519-6984.245372. eCollection 2021.
Hybridization and Polyploidization are most common of the phenomenon observed in plants, especially in the genus Nicotiana leading to the duplication of genome. Although genomic changes associated with these events has been studied at various levels but the genome size and GC content variation is less understood because of absence of sufficient genomic data. In this study the flow cytometry technique was used to uncover the genome size and GC contents of 46 Nicotiana species and we compared the genomic changes associated with the hybridization events along evolutionary time scale. The genome size among Nicotiana species varied between 3.28 pg and 11.88 pg whereas GC contents varied between 37.22% and 51.25%. The tetraploid species in genus Nicotiana including section Polydiclae, Repandae, Nicotiana, Rustica and Sauveolentes revealed both up and downsizing in their genome sizes when compared to the sum of genomes of their ancestral species. The genome sizes of three homoploid hybrids were found near their ancestral species. Loss of large genome sequence was observed in the evolutionary more aged species (>10 Myr) as compared to the recently evolved one's (<0.2 Myr). The GC contents were found homogenous with a mean difference of 2.46% among the Nicotiana species. It is concluded that genome size change appeared in either direction whereas the GC contents were found more homogenous in genus Nicotiana.
杂交和多倍体化是植物中最常见的现象,特别是在烟草属中,导致基因组的重复。尽管已经在各个层面研究了与这些事件相关的基因组变化,但由于缺乏足够的基因组数据,对基因组大小和 GC 含量的变化了解较少。在这项研究中,我们使用流式细胞术技术揭示了 46 种烟草属物种的基因组大小和 GC 含量,并比较了与进化时间尺度上的杂交事件相关的基因组变化。烟草属物种的基因组大小在 3.28pg 到 11.88pg 之间变化,而 GC 含量在 37.22%到 51.25%之间变化。包括多倍体、柔毛、烟草、糙皮和 Sauveolentes 等组的烟草属四倍体物种,与它们祖先物种的基因组总和相比,其基因组大小既有增大也有减小。三个同源多倍体杂种的基因组大小接近它们的祖先物种。与进化较老的物种(>10 Myr)相比,在进化较新的物种(<0.2 Myr)中观察到较大基因组序列的丢失。发现烟草属物种之间的 GC 含量具有同源性,平均差异为 2.46%。结论是,基因组大小的变化出现在任何一个方向,而 GC 含量在烟草属中则更加均匀。