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调控元件对猪肺炎支原体 7448 株在氧化应激和热休克过程中转录反应的影响。

The influence of regulatory elements on Mycoplasma hyopneumoniae 7448 transcriptional response during oxidative stress and heat shock.

机构信息

Laboratory of Veterinary Bacteriology, Veterinary Pathology Department, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.

Graduate Program in Cell and Molecular Biology, Biotechnology Center, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.

出版信息

Mol Biol Rep. 2022 Jan;49(1):139-147. doi: 10.1007/s11033-021-06851-7. Epub 2021 Oct 21.

Abstract

BACKGROUND

The comprehension of genome organization and gene modulation is essential for understanding pathogens' infection mechanisms. Mycoplasma hyopneumoniae 7448 genome is organized in transcriptional units (TUs), which are flanked by regulatory elements such as putative promoters, terminators and repetitive sequences. Yet the relationship between the presence of these elements and bacterial responses during stress conditions remains unclear. Thus, in this study, in silico and RT-qPCR analyses were associated to determine the effect of regulatory elements in gene expression regulation upon heat shock and oxidative stress conditions.

METHODS AND RESULTS

Thirteen TU's organizational profiles were found based on promoters and terminators distribution. Differential expression in genes sharing the same TUs was observed, suggesting the activity of internal regulatory elements. Moreover, 88.8% of tested genes were differentially expressed under oxidative stress in comparison to the control condition, being 81.3% of them surrounded by their own regulatory elements. Similarly, under heat shock, 44.4% of the genes showed regulation when compared to control condition, being 75.0% of them surrounded by their own regulatory elements.

CONCLUSIONS

Altogether, this data suggests the activity of internal regulatory elements in gene modulation of M. hyopneumoniae 7448 transcription.

摘要

背景

理解基因组组织和基因调控对于理解病原体的感染机制至关重要。猪肺炎支原体 7448 基因组组织在转录单位(TU)中,这些 TU 被假定的启动子、终止子和重复序列等调控元件所包围。然而,这些元件的存在与细菌在应激条件下的反应之间的关系尚不清楚。因此,在这项研究中,我们通过计算机分析和 RT-qPCR 分析相结合,确定了调控元件在热休克和氧化应激条件下对基因表达调控的影响。

方法和结果

根据启动子和终止子的分布,发现了 13 种 TU 组织特征。在具有相同 TU 的基因中观察到差异表达,表明存在内部调控元件的活性。此外,与对照条件相比,88.8%的测试基因在氧化应激下差异表达,其中 81.3%的基因被自身的调控元件所包围。同样,在热休克下,与对照条件相比,44.4%的基因受到调控,其中 75.0%的基因被自身的调控元件所包围。

结论

综上所述,这些数据表明了内部调控元件在猪肺炎支原体 7448 转录基因调控中的活性。

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