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一种用于记录和定量细菌群体运动的低成本成像平台。

An Inexpensive Imaging Platform to Record and Quantitate Bacterial Swarming.

作者信息

Chen Weijie, Mani Sridhar, Tang Jay X

机构信息

Department of Medicine, Genetics and Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA.

Department of Physics, Brown University, 182 Hope Street, Providence, RI 02912, USA.

出版信息

Bio Protoc. 2021 Sep 20;11(18):e4162. doi: 10.21769/BioProtoc.4162.

Abstract

Bacterial swarming refers to a rapid spread, with coordinated motion, of flagellated bacteria on a semi-solid surface (Harshey, 2003). There has been extensive study on this particular mode of motility because of its interesting biological and physical relevance, ., enhanced antibiotic resistance (Kearns, 2010) and turbulent collective motion ( Steager , 2008 ). Commercial equipment for the live recording of swarm expansion can easily cost tens of thousands of dollars (Morales- Soto , 2015 ); yet, often the conditions are not accurately controlled, resulting in poor robustness and a lack of reproducibility. Here, we describe a reliable design and operations protocol to perform reproducible bacterial swarming assays using time-lapse photography. This protocol consists of three main steps: 1) building a "homemade," environment-controlled photographing incubator; 2) performing a bacterial swarming assay; and 3) calculating the swarming rate from serial photos taken over time. An efficient way of calculating the bacterial swarming rate is crucial in performing swarming phenotype-related studies, ., screening swarming-deficient isogenic mutant strains. The incubator is economical, easy to operate, and has a wide range of applications. In fact, this system can be applied to many slowly evolving processes, such as biofilm formation and fungal growth, which need to be monitored by camera under a controlled temperature and ambient humidity.

摘要

细菌群体游动是指鞭毛菌在半固体表面以协调运动的方式快速扩散(哈西,2003年)。由于其有趣的生物学和物理学意义,如增强抗生素抗性(卡恩斯,2010年)和湍流集体运动(斯特格,2008年),人们对这种特殊的运动模式进行了广泛研究。用于实时记录群体扩张的商业设备很容易花费数万美元(莫拉莱斯 - 索托,2015年);然而,通常条件无法精确控制,导致稳健性差且缺乏可重复性。在这里,我们描述了一种可靠的设计和操作方案,使用延时摄影来进行可重复的细菌群体游动实验。该方案包括三个主要步骤:1)构建一个“自制”的环境控制摄影培养箱;2)进行细菌群体游动实验;3)从随时间拍摄的系列照片中计算群体游动速率。在进行与群体游动表型相关的研究,如筛选群体游动缺陷的同基因突变菌株时,一种有效的计算细菌群体游动速率的方法至关重要。该培养箱经济实惠、易于操作且应用广泛。实际上,这个系统可以应用于许多缓慢演变的过程,如生物膜形成和真菌生长,这些过程需要在可控的温度和环境湿度下通过相机进行监测。

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