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A Light-Weight Text Summarization System for Fast Access to Medical Evidence.

作者信息

Sarker Abeed, Yang Yuan-Chi, Al-Garadi Mohammed Ali, Abbas Aamir

机构信息

Department of Biomedical Informatics, School of Medicine, Emory University, Atlanta, GA, United States.

Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, United States.

出版信息

Front Digit Health. 2020 Dec 4;2:585559. doi: 10.3389/fdgth.2020.585559. eCollection 2020.


DOI:10.3389/fdgth.2020.585559
PMID:34713057
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8521877/
Abstract

As the volume of published medical research continues to grow rapidly, staying up-to-date with the best-available research evidence regarding specific topics is becoming an increasingly challenging problem for medical experts and researchers. The current COVID19 pandemic is a good example of a topic on which research evidence is rapidly evolving. Automatic query-focused text summarization approaches may help researchers to swiftly review research evidence by presenting salient and query-relevant information from newly-published articles in a condensed manner. Typical medical text summarization approaches require domain knowledge, and the performances of such systems rely on resource-heavy medical domain-specific knowledge sources and pre-processing methods (e.g., text classification) for deriving semantic information. Consequently, these systems are often difficult to speedily customize, extend, or deploy in low-resource settings, and they are often operationally slow. In this paper, we propose a fast and simple extractive summarization approach that can be easily deployed and run, and may thus aid medical experts and researchers obtain fast access to the latest research evidence. At runtime, our system utilizes similarity measurements derived from pre-trained medical domain-specific word embeddings in addition to simple features, rather than computationally-expensive pre-processing and resource-heavy knowledge bases. Automatic evaluation using ROUGE-a summary evaluation tool-on a public dataset for evidence-based medicine shows that our system's performance, despite the simple implementation, is statistically comparable with the state-of-the-art. Extrinsic manual evaluation based on recently-released COVID19 articles demonstrates that the summarizer performance is close to human agreement, which is generally low, for extractive summarization.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f97/8521877/d6f4c2398704/fdgth-02-585559-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f97/8521877/bfeb661c6b30/fdgth-02-585559-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f97/8521877/d6f4c2398704/fdgth-02-585559-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f97/8521877/bfeb661c6b30/fdgth-02-585559-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f97/8521877/d6f4c2398704/fdgth-02-585559-g0002.jpg

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A Light-Weight Text Summarization System for Fast Access to Medical Evidence.

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引用本文的文献

[1]
Information Capsule: A New Approach for Summarizing Medical Information.

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本文引用的文献

[1]
Summarization of biomedical articles using domain-specific word embeddings and graph ranking.

J Biomed Inform. 2020-7

[2]
SemBioNLQA: A semantic biomedical question answering system for retrieving exact and ideal answers to natural language questions.

Artif Intell Med. 2019-11-28

[3]
Progress in evidence-based medicine: a quarter century on.

Lancet. 2017-2-17

[4]
Development of a Search Strategy for an Evidence Based Retrieval Service.

PLoS One. 2016-12-9

[5]
Query-oriented evidence extraction to support evidence-based medicine practice.

J Biomed Inform. 2016-2

[6]
Patient-oriented evidence that matters (POEMs)™ suggest potential clinical topics for the Choosing Wisely™ campaign.

J Am Board Fam Med. 2015

[7]
Biomedical question answering using semantic relations.

BMC Bioinformatics. 2015-1-16

[8]
PICO, PICOS and SPIDER: a comparison study of specificity and sensitivity in three search tools for qualitative systematic reviews.

BMC Health Serv Res. 2014-11-21

[9]
Comparing different knowledge sources for the automatic summarization of biomedical literature.

J Biomed Inform. 2014-12

[10]
Text summarization in the biomedical domain: a systematic review of recent research.

J Biomed Inform. 2014-12

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