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《指数族嵌入及其在单细胞RNA测序数据细胞发育轨迹中的应用》讨论

Discussion of "Exponential-family Embedding with Application to Cell Developmental Trajectories for Single-cell RNA-seq Data".

作者信息

Ji Zhicheng, Ji Hongkai

机构信息

Department of Biostatistics and Bioinformatics, Duke University School of Medicine, Durham, North Carolina 27710, United States.

Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 21205, United States.

出版信息

J Am Stat Assoc. 2021;116(534):471-474. doi: 10.1080/01621459.2021.1880920. Epub 2021 Jun 8.

Abstract

Exponential-family singular value decomposition (eSVD) is a new approach for embedding multivariate data into a lower-dimensional space. It provides an elegant dimension reduction framework with flexibility to handle one-parameter exponential family distributions and proven consistency. This approach adds a valuable new tool to the toolbox of data analysts. Here we discuss a number of open problems and challenges that remain to be addressed in the future in order to unleash the full potential of eSVD and other similar approaches.

摘要

指数族奇异值分解(eSVD)是一种将多变量数据嵌入低维空间的新方法。它提供了一个优雅的降维框架,能够灵活处理单参数指数族分布且具有已证明的一致性。这种方法为数据分析人员的工具库增添了一个有价值的新工具。在此,我们讨论了一些未来仍有待解决的开放问题和挑战,以便充分发挥eSVD及其他类似方法的全部潜力。

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本文引用的文献

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Comprehensive Integration of Single-Cell Data.单细胞数据的综合整合。
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