Zhong Anyuan, Chen Ting, Zhou Tong, Zhang Zengli, Shi Minhua
Department of Pulmonary and Critical Care Medicine, The Second Affiliated Hospital of Soochow University, Suzhou, China.
Front Pharmacol. 2021 Oct 19;12:728420. doi: 10.3389/fphar.2021.728420. eCollection 2021.
Tumor protein D52-like 2 (TPD52L2) belongs to the members of the TPD52 family. TPD52L2 was reported to regulate proliferation and apoptosis in cancer cells. However, its role in lung adenocarcinoma (LUAD) was uncertain. We evaluated the expression, methylation, copy number alteration, and prognostic significance of TPD52L2 using RNA-seq data from The Cancer Genome Atlas (TCGA). Enrichment analysis of TPD52L2 was conducted using the R package "clusterProfiler." We further assessed the association between TPD52L2 and immune cell infiltration level, immunosuppressive genes, and tumor mutational burden (TMB). The difference of gene mutant frequency in high- and low-TPD52L2 groups was also analyzed. The results showed that TPD52L2 was over-expressed and predicted worse survival status in LUAD. We also found that TPD52L2 expression was positively associated with the infiltration levels of immunosuppressive cells, such as regulatory T cells (Tregs) and tumor-associated macrophages (TAMs), and negatively correlated with immune killer cells, such as CD8 T and NK cells in pan-cancer, including LUAD. In addition, TPD52L2 expression was associated with immunosuppressive genes and TMB. High expression of TPD52L2 was with more mutant frequency of TP53. In summary, our results show that TPD52L2 is an oncogene and a potential prognostic biomarker in LUAD. High TPD52L2 expression is a possible indicator of immune infiltration and associated with tumor immunosuppressive status in LUAD.
肿瘤蛋白D52样蛋白2(TPD52L2)属于TPD52家族成员。据报道,TPD52L2可调节癌细胞的增殖和凋亡。然而,其在肺腺癌(LUAD)中的作用尚不确定。我们使用来自癌症基因组图谱(TCGA)的RNA测序数据评估了TPD52L2的表达、甲基化、拷贝数改变及预后意义。使用R包“clusterProfiler”对TPD52L2进行富集分析。我们进一步评估了TPD52L2与免疫细胞浸润水平、免疫抑制基因及肿瘤突变负荷(TMB)之间的关联。还分析了高TPD52L2组和低TPD52L2组基因变异频率的差异。结果显示,TPD52L2在LUAD中过度表达且预示着较差的生存状态。我们还发现,TPD52L2的表达与免疫抑制细胞如调节性T细胞(Tregs)和肿瘤相关巨噬细胞(TAMs)的浸润水平呈正相关,而在包括LUAD在内的泛癌中与免疫杀伤细胞如CD8 T细胞和NK细胞呈负相关。此外,TPD52L2的表达与免疫抑制基因及TMB相关。TPD52L2的高表达伴随着TP53更高的变异频率。总之,我们的结果表明,TPD52L2是LUAD中的一个癌基因和潜在的预后生物标志物。TPD52L2的高表达可能是免疫浸润的一个指标,并与LUAD中的肿瘤免疫抑制状态相关。