POY版本5：在多个最优标准下使用动态同源性进行系统发育分析。

POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria.

作者信息

Wheeler Ward C, Lucaroni Nicholas, Hong Lin, Crowley Louise M, Varón Andrés

机构信息

Division of Invertebrate Zoology, American Museum of Natural History, Central Park West @ 79th Street, New York, NY, 10024-5192, USA.

出版信息

Cladistics. 2015 Apr;31(2):189-196. doi: 10.1111/cla.12083. Epub 2014 Jun 13.

DOI:10.1111/cla.12083

PMID:34772261

Abstract

We present POY version 5, an open source program for the phylogenetic analysis of diverse data types including qualitative, aligned sequences, unaligned sequences, genomic data, and user-defined sequences. In addition to the maximum-parsimony optimality criterion supported by POY4, POY5 supports several types of maximum likelihood as well as posterior probability. To make these analyses feasible, new heuristic search algorithms and parallelization options have been implemented for all criteria.

摘要

我们展示了POY版本5，这是一个用于对多种数据类型进行系统发育分析的开源程序，这些数据类型包括定性数据、比对序列、未比对序列、基因组数据和用户定义序列。除了POY4所支持的最大简约性最优标准外，POY5还支持多种类型的最大似然法以及后验概率。为使这些分析可行，针对所有标准都实施了新的启发式搜索算法和并行化选项。