Varón Andrés, Vinh Le Sy, Wheeler Ward C
Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY, USA.
Computer Science Department, The Graduate School and University Center, The City University of New York, 365 Fifth Avenue, New York, NY, USA.
Cladistics. 2010 Feb;26(1):72-85. doi: 10.1111/j.1096-0031.2009.00282.x. Epub 2009 Sep 24.
We present POY version 4, an open source program for the phylogenetic analysis of morphological, prealigned sequence, unaligned sequence, and genomic data. POY allows phylogenetic inference when not only substitutions, but insertions, deletions, and rearrangement events are allowed (computed using the breakpoint or inversion distance). Compared with previous versions, POY 4 provides greater flexibility, a larger number of supported parameter sets, numerous execution time improvements, a vastly improved user interface, greater quality control, and extensive documentation. We introduce POY's basic features, and present a simple example illustrating the performance improvements over previous versions of the application. © The Willi Hennig Society 2009.
我们展示了POY版本4，这是一个用于形态学、预比对序列、未比对序列和基因组数据系统发育分析的开源程序。POY不仅允许在存在替换的情况下进行系统发育推断，还允许插入、缺失和重排事件（使用断点或倒位距离计算）。与以前的版本相比，POY 4具有更高的灵活性、更多支持的参数集、大量执行时间改进、大幅改进的用户界面、更高的质量控制以及详尽的文档。我们介绍了POY的基本功能，并给出一个简单示例来说明其相较于该应用程序以前版本在性能上的提升。© 威利·亨尼希协会2009年。
