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用于高准确度预测 BODIPYs 吸收的深度神经网络模型。

Deep neural network model for highly accurate prediction of BODIPYs absorption.

机构信息

G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya Street, 153045 Ivanovo, Russia.

G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya Street, 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, Ivanovo 153000, Russia.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2022 Feb 15;267(Pt 2):120577. doi: 10.1016/j.saa.2021.120577. Epub 2021 Nov 3.

Abstract

A possibility to accurately predict the absorption maximum wavelength of BODIPYs was investigated. We found that previously reported models had a low accuracy (40-57 nm) to predict BODIPYs due to the limited dataset sizes and/or number of BODIPYs (few hundreds). New models developed in this study were based on data of 6000-plus fluorescent dyes (including 4000-plus BODIPYs) and the deep neural network architecture. The high prediction accuracy (five-fold cross-validation room mean squared error (RMSE) of 18.4 nm) was obtained using a consensus model, which was more accurate than individual models. This model provided the excellent accuracy (RMSE of 8 nm) for molecules previously synthesized in our laboratory as well as for prospective validation of three new BODIPYs. We found that solvent properties did not significantly influence the model accuracy since only few BODIPYs exhibited solvatochromism. The analysis of large prediction errors suggested that compounds able to have intermolecular interactions with solvent or salts were likely to be incorrectly predicted. The consensus model is freely available at https://ochem.eu/article/134921 and can help the other researchers to accelerate design of new dyes with desired properties.

摘要

我们研究了一种准确预测 BODIPY 吸收峰波长的可能性。我们发现,由于数据集的大小和/或 BODIPY 的数量有限(几百个),以前报道的模型的准确性较低(40-57nm)。本研究中开发的新模型基于 6000 多种荧光染料(包括 4000 多种 BODIPY)和深度神经网络架构的数据。使用共识模型获得了高预测准确性(五重交叉验证均方根误差(RMSE)为 18.4nm),该模型比单个模型更准确。该模型对我们实验室以前合成的分子以及对三个新 BODIPY 的前瞻性验证提供了出色的准确性(RMSE 为 8nm)。我们发现,由于只有少数 BODIPY 表现出溶剂变色性,溶剂性质对模型准确性没有显著影响。对大预测误差的分析表明,可能与溶剂或盐发生分子间相互作用的化合物很可能被错误预测。共识模型可在 https://ochem.eu/article/134921 上免费获取,可帮助其他研究人员加速设计具有所需性质的新型染料。

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