Singh Phougeishangbam Rolish, van de Vossenberg Bart T L H, Rybarczyk-Mydłowska Katarzyna, Kowalewska-Groszkowska Magdalena, Bert Wim, Karssen Gerrit
Nematology Research Unit, Department of Biology, Ghent University, 9000 Ghent, Belgium.
National Plant Protection Organization, National Reference Centre for Plant Health, 6706 EA Wageningen, The Netherlands.
Phytopathology. 2022 May;112(5):1152-1164. doi: 10.1094/PHYTO-08-21-0363-R. Epub 2022 Apr 6.
is a widely distributed, economically important plant-parasitic nematode group whose species-level identification relies largely on limited morphological characters, including character-based tabular keys and molecular data of ribosomal and mitochondrial genes. In this study, a combined morphological and molecular analysis of three populations of from Belgium, Poland, and the Netherlands revealed important character variations of this species, leading to synonymization of with and a high nucleotide variation within gene sequences in these populations. Additional Illumina sequencing of DNA from individuals of the Dutch population revealed two variants of mitogenomes, each approximately 23 Kb in size, differing by approximately 9% and containing 11 protein-coding genes, 2 ribosomal RNA genes, and as many as 29 transfer RNA genes. In addition to the first representative whole-genome shotgun sequence datasets of the genus , this study also provides the full-length mitogenome and the ribosomal DNA sequences of .
是一类广泛分布、具有重要经济意义的植物寄生线虫,其物种水平的鉴定很大程度上依赖于有限的形态特征,包括基于特征的表格检索表以及核糖体和线粒体基因的分子数据。在本研究中,对来自比利时、波兰和荷兰的三个群体进行形态学和分子学联合分析,揭示了该物种的重要特征变异,导致与[另一物种名称]同义,并在这些群体的[基因名称]基因序列内存在高度核苷酸变异。对荷兰群体个体的DNA进行额外的Illumina测序,发现了两种线粒体基因组变体,每个大小约为23 Kb,差异约为9%,包含11个蛋白质编码基因、2个核糖体RNA基因以及多达29个转运RNA基因。除了该属的首个代表性全基因组鸟枪法测序数据集外,本研究还提供了[物种名称]的全长线粒体基因组和核糖体DNA序列。