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N-H⋯X相互作用稳定了杂环α-氨基酸衍生物中残基内C5氢键结合的构象。

N-H⋯X interactions stabilize intra-residue C5 hydrogen bonded conformations in heterocyclic α-amino acid derivatives.

作者信息

Mundlapati Venkateswara Rao, Imani Zeynab, D'mello Viola C, Brenner Valérie, Gloaguen Eric, Baltaze Jean-Pierre, Robin Sylvie, Mons Michel, Aitken David J

机构信息

Université Paris-Saclay, CEA, CNRS, LIDYL 91191 Gif-sur-Yvette France

Université Paris-Saclay, CNRS, ICMMO 91405 Orsay France

出版信息

Chem Sci. 2021 Oct 22;12(44):14826-14832. doi: 10.1039/d1sc05014a. eCollection 2021 Nov 17.

DOI:10.1039/d1sc05014a
PMID:34820098
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8597926/
Abstract

Nature makes extensive and elaborate use of hydrogen bonding to assemble and stabilize biomolecular structures. The shapes of peptides and proteins rely significantly on N-H⋯O[double bond, length as m-dash]C interactions, which are the linchpins of turns, sheets and helices. The C5 H-bond, in which a single residue provides both donor and acceptor, is generally considered too weak to force the backbone to adopt extended structures. Exploiting the synergy between gas phase (experimental and quantum chemistry) and solution spectroscopies to decipher IR spectroscopic data, this work demonstrates that the extended C5-based conformation in 4-membered ring heterocyclic α-amino acid derivatives is significantly stabilized by the formation of an N-H⋯X H-bond. In this synergic system the strength of the C5 interaction remains constant while the N-H⋯X H-bond strength, and thereby the support provided by it, varies with the heteroatom.

摘要

自然界广泛且精巧地利用氢键来组装和稳定生物分子结构。肽和蛋白质的形状很大程度上依赖于N-H⋯O[双键,长度如m破折号]C相互作用,这些相互作用是转角、片层和螺旋结构的关键。在C5氢键中,单个残基同时提供供体和受体,通常认为其强度太弱,无法迫使主链采取伸展结构。通过利用气相(实验和量子化学)与溶液光谱学之间的协同作用来解读红外光谱数据,这项工作表明,在四元环杂环α-氨基酸衍生物中,基于C5的伸展构象通过形成N-H⋯X氢键而得到显著稳定。在这个协同体系中,C5相互作用的强度保持不变,而N-H⋯X氢键的强度以及由此提供的支撑则随杂原子而变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/3be51267b772/d1sc05014a-f7.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/a5178b7628bf/d1sc05014a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/543196e69106/d1sc05014a-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/3be51267b772/d1sc05014a-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/74a7e49ad18a/d1sc05014a-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/e1abc3e34811/d1sc05014a-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/8418810612cc/d1sc05014a-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/f44970518c33/d1sc05014a-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/a5178b7628bf/d1sc05014a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/543196e69106/d1sc05014a-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a3e3/8597926/3be51267b772/d1sc05014a-f7.jpg

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