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鉴定 T4 样噬菌体尾部组装分子伴侣基因提示了其编码蛋白生物发生的一种不同于翻译移框的机制。

Identification of the tail assembly chaperone genes of T4-Like phages suggests a mechanism other than translational frameshifting for biogenesis of their encoded proteins.

机构信息

Department of Biochemistry, University of Toronto, Toronto, Ontario, Canada.

Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.

出版信息

Virology. 2022 Jan;566:9-15. doi: 10.1016/j.virol.2021.11.003. Epub 2021 Nov 18.

Abstract

Tape measure (TM) proteins are essential for the formation of long-tailed phages. TM protein assembly into tails requires the action of tail assembly chaperones (TACs). TACs (e.g. gpG and gpT of E. coli phage lambda) are usually produced in a short (TAC-N) and long form (TAC-NC) with the latter comprised of TAC-N with an additional C-terminal domain (TAC-C). TAC-NC is generally synthesized through a ribosomal frameshifting mechanism. TAC encoding genes have never been identified in the intensively studied Escherichia coli phage T4, or any related phages. Here, we have bioinformatically identified putative TAC encoding genes in diverse T4-like phage genomes. The frameshifting mechanism for producing TAC-NC appears to be conserved in several T4-like phage groups. However, the group including phage T4 itself likely employs a different strategy whereby TAC-N and TAC-NC are encoded by separate genes (26 and 51 in phage T4).

摘要

Tape measure (TM) 蛋白对于长尾噬菌体的形成至关重要。TM 蛋白组装成尾巴需要尾巴组装伴侣 (TAC) 的作用。TAC(例如大肠杆菌噬菌体 lambda 的 gpG 和 gpT)通常以短(TAC-N)和长形式(TAC-NC)产生,后者由 TAC-N 加上额外的 C 末端结构域(TAC-C)组成。TAC-NC 通常通过核糖体移码机制合成。在深入研究的大肠杆菌噬菌体 T4 或任何相关噬菌体中,从未鉴定出过 TAC 编码基因。在这里,我们通过生物信息学方法在多种 T4 样噬菌体基因组中鉴定出了可能的 TAC 编码基因。产生 TAC-NC 的移码机制在几个 T4 样噬菌体群体中似乎是保守的。然而,包括噬菌体 T4 本身在内的群体可能采用不同的策略,即 TAC-N 和 TAC-NC 由单独的基因编码(噬菌体 T4 中的 26 和 51)。

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