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触发因子伴侣蛋白的锌依赖性寡聚化

Zinc-Dependent Oligomerization of Trigger Factor Chaperone.

作者信息

Zhu Haojie, Matsusaki Motonori, Sugawara Taiga, Ishimori Koichiro, Saio Tomohide

机构信息

Institute of Advanced Medical Sciences, Tokushima University, Tokushima 770-8503, Japan.

Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-8628, Japan.

出版信息

Biology (Basel). 2021 Oct 26;10(11):1106. doi: 10.3390/biology10111106.

DOI:10.3390/biology10111106
PMID:34827099
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8614707/
Abstract

trigger factor (TF) is a zinc-dependent molecular chaperone whose folding-arrest activity is regulated by Zn. However, little is known about the mechanism of zinc-dependent regulation of the TF activity. Here we exploit in vitro biophysical experiments to investigate zinc-binding, the oligomeric state, the secondary structure, and the thermal stability of TF in the absence and presence of Zn. The data show that full-length TF binds Zn, but the isolated domains and tandem domains of TF do not bind to Zn. Furthermore, circular dichroism (CD) and nuclear magnetic resonance (NMR) spectra suggested that Zn-binding induces the partial structural changes of TF, and size exclusion chromatography-multi-angle light scattering (SEC-MALS) showed that Zn promotes TF oligomerization. Given the previous work showing that the activity regulation of trigger factor is accompanied by oligomerization, the data suggest that TF exploits zinc ions to induce the structural change coupled with the oligomerization to assemble the client-binding site, thereby effectively preventing proteins from misfolding in the thermal environment.

摘要

触发因子(TF)是一种锌依赖性分子伴侣,其折叠抑制活性受锌调节。然而,关于锌依赖性调节TF活性的机制知之甚少。在这里,我们利用体外生物物理实验来研究在有无锌的情况下TF的锌结合、寡聚状态、二级结构和热稳定性。数据表明,全长TF结合锌,但TF的分离结构域和串联结构域不与锌结合。此外,圆二色性(CD)和核磁共振(NMR)光谱表明,锌结合诱导了TF的部分结构变化,尺寸排阻色谱-多角度光散射(SEC-MALS)表明锌促进TF寡聚化。鉴于之前的工作表明触发因子的活性调节伴随着寡聚化,数据表明TF利用锌离子诱导与寡聚化相关的结构变化,以组装客户结合位点,从而有效地防止蛋白质在热环境中错误折叠。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/7104159a72a8/biology-10-01106-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/aeae61e20ac5/biology-10-01106-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/03ee7e517440/biology-10-01106-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/2b3888fcff65/biology-10-01106-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/3419b33ba8f8/biology-10-01106-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/7104159a72a8/biology-10-01106-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/aeae61e20ac5/biology-10-01106-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/03ee7e517440/biology-10-01106-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/2b3888fcff65/biology-10-01106-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/3419b33ba8f8/biology-10-01106-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da5a/8614707/7104159a72a8/biology-10-01106-g005.jpg

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本文引用的文献

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Highly accurate protein structure prediction with AlphaFold.利用 AlphaFold 进行高精度蛋白质结构预测。
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DichroWeb, a website for calculating protein secondary structure from circular dichroism spectroscopic data.DichroWeb,一个用于根据圆二色性光谱数据计算蛋白质二级结构的网站。
Protein Sci. 2022 Jan;31(1):37-46. doi: 10.1002/pro.4153. Epub 2021 Jul 21.
3
Functional cooperativity between the trigger factor chaperone and the ClpXP proteolytic complex.
触发因子伴侣与 ClpXP 蛋白水解复合物之间的功能协同作用。
Nat Commun. 2021 Jan 12;12(1):281. doi: 10.1038/s41467-020-20553-x.
4
Structural changes induced by ligand binding drastically increase the thermostability of the Ser/Thr protein kinase TpkD from Thermus thermophilus HB8.配体结合诱导的结构变化极大地提高了嗜热栖热菌 TpkD 丝氨酸/苏氨酸蛋白激酶的热稳定性。
FEBS Lett. 2021 Jan;595(2):264-274. doi: 10.1002/1873-3468.13996. Epub 2020 Nov 28.
5
Trigger factor is a bona fide secretory pathway chaperone that interacts with SecB and the translocase.触发因子是一种真正的分泌途径伴侣蛋白,它与 SecB 和易位酶相互作用。
EMBO Rep. 2020 Jun 4;21(6):e49054. doi: 10.15252/embr.201949054. Epub 2020 Apr 19.
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New insights into the zinc-α2-glycoprotein (ZAG) scaffold and its metal ions binding abilities using spectroscopic techniques.利用光谱技术深入了解锌-α2-糖蛋白 (ZAG) 支架及其与金属离子的结合能力。
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Structural insight into proline / isomerization of unfolded proteins catalyzed by the trigger factor chaperone.结构洞察引发因子伴侣催化未折叠蛋白脯氨酸/异构化。
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The dynamic dimer structure of the chaperone Trigger Factor.伴侣蛋白 Trigger Factor 的动态二聚体结构。
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