• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于高通量 SNP 标记的重组自交系群体中垩白度和粒形的基因组区域鉴定。

Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers.

机构信息

Department of Crop, Soil and Environmental Sciences, University of Arkansas, Fayetteville, AR 72701, USA.

Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia.

出版信息

Genes (Basel). 2021 Oct 24;12(11):1690. doi: 10.3390/genes12111690.

DOI:10.3390/genes12111690
PMID:34828295
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8625982/
Abstract

Rice ( L.) is the primary food for half of the global population. Recently, there has been increasing concern in the rice industry regarding the eating and milling quality of rice. This study was conducted to identify genetic information for grain characteristics using a recombinant inbred line (RIL) population from a japonica/indica cross based on high-throughput SNP markers and to provide a strategy for improving rice quality. The RIL population used was derived from a cross of "Kaybonnet (KBNT )" and "ZHE733" named the K/Z RIL population, consisting of 198 lines. A total of 4133 SNP markers were used to identify quantitative trait loci (QTLs) with higher resolution and to identify more accurate candidate genes. The characteristics measured included grain length (GL), grain width (GW), grain length to width ratio (RGLW), hundred grain weight (HGW), and percent chalkiness (PC). QTL analysis was performed using QTL IciMapping software. Continuous distributions and transgressive segregations of all the traits were observed, suggesting that the traits were quantitatively inherited. A total of twenty-eight QTLs and ninety-two candidate genes related to rice grain characteristics were identified. This genetic information is important to develop rice varieties of high quality.

摘要

大米(L.)是全球一半人口的主要食物。最近,稻米行业越来越关注稻米的食用和碾磨品质。本研究旨在利用基于高通量 SNP 标记的籼稻/粳稻杂交重组自交系(RIL)群体,鉴定与粒型特征相关的遗传信息,并为提高稻米品质提供策略。所用的 RIL 群体来源于名为 K/Z RIL 群体的“Kaybonnet(KBNT)”和“ZHE733”之间的杂交,由 198 个系组成。共使用了 4133 个 SNP 标记来鉴定具有更高分辨率的数量性状位点(QTL),并鉴定更准确的候选基因。所测量的特征包括粒长(GL)、粒宽(GW)、长宽比(RGLW)、百粒重(HGW)和垩白率(PC)。使用 QTL IciMapping 软件进行 QTL 分析。所有性状均观察到连续分布和超亲分离,表明这些性状是数量遗传的。共鉴定到与水稻粒型特征相关的 28 个 QTL 和 92 个候选基因。这些遗传信息对于开发优质水稻品种非常重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9713/8625982/4bbfb7410b88/genes-12-01690-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9713/8625982/55d7ddb4b062/genes-12-01690-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9713/8625982/39d1c81cd9db/genes-12-01690-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9713/8625982/4bbfb7410b88/genes-12-01690-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9713/8625982/55d7ddb4b062/genes-12-01690-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9713/8625982/39d1c81cd9db/genes-12-01690-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9713/8625982/4bbfb7410b88/genes-12-01690-g003.jpg

相似文献

1
Identification of Genomic Regions Controlling Chalkiness and Grain Characteristics in a Recombinant Inbred Line Rice Population Based on High-Throughput SNP Markers.基于高通量 SNP 标记的重组自交系群体中垩白度和粒形的基因组区域鉴定。
Genes (Basel). 2021 Oct 24;12(11):1690. doi: 10.3390/genes12111690.
2
QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativa L.).基于新株型水稻重组自交系的产量及产量相关性状的新型基因组区域的QTL分析(水稻(Oryza sativa L.))
BMC Plant Biol. 2012 Aug 9;12:137. doi: 10.1186/1471-2229-12-137.
3
QTL analysis for rice grain length and fine mapping of an identified QTL with stable and major effects.水稻粒长的QTL分析及一个具有稳定主效的已鉴定QTL的精细定位。
Theor Appl Genet. 2006 May;112(7):1258-70. doi: 10.1007/s00122-006-0227-0. Epub 2006 Feb 14.
4
Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress.在夜间高温胁迫下,美国水稻重组自交系群体中与粒质性状相关的 QTL 的分子图谱和特征分析。
Sci Rep. 2023 Mar 25;13(1):4880. doi: 10.1038/s41598-023-31399-w.
5
Genetic mapping for grain quality and yield-attributed traits in Basmati rice using SSR-based genetic map.利用基于 SSR 的遗传图谱对巴斯马蒂稻米的粒质和产量性状进行遗传作图。
J Biosci. 2021;46.
6
Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7.利用源自两个不同亲本的重组自交系群体对水稻粒形进行遗传剖析,并精细定位一个多效数量性状位点 qGL7。
BMC Genet. 2010 Feb 26;11:16. doi: 10.1186/1471-2156-11-16.
7
Genome wide association mapping for grain shape traits in indica rice.籼稻粒形性状的全基因组关联图谱分析
Planta. 2016 Oct;244(4):819-30. doi: 10.1007/s00425-016-2548-9. Epub 2016 May 19.
8
Mapping of qChalk1 controlling grain chalkiness in japonica rice.定位 qChalk1 控制粳稻粒垩白的基因。
Mol Biol Rep. 2023 Jul;50(7):5879-5887. doi: 10.1007/s11033-023-08537-8. Epub 2023 May 25.
9
Genome-Wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm.全球籼稻种质资源库中稻米外观和碾磨品质的全基因组关联研究
PLoS One. 2015 Dec 29;10(12):e0145577. doi: 10.1371/journal.pone.0145577. eCollection 2015.
10
QTLs and Candidate Loci Associated with Drought Tolerance Traits of Kaybonnet x ZHE733 Recombinant Inbred Lines Rice Population.与凯本纳特×浙 733 重组自交系群体耐旱性状相关的 QTLs 和候选基因座。
Int J Mol Sci. 2023 Oct 14;24(20):15167. doi: 10.3390/ijms242015167.

引用本文的文献

1
QTLs and Candidate Loci Associated with Drought Tolerance Traits of Kaybonnet x ZHE733 Recombinant Inbred Lines Rice Population.与凯本纳特×浙 733 重组自交系群体耐旱性状相关的 QTLs 和候选基因座。
Int J Mol Sci. 2023 Oct 14;24(20):15167. doi: 10.3390/ijms242015167.
2
Mapping of qChalk1 controlling grain chalkiness in japonica rice.定位 qChalk1 控制粳稻粒垩白的基因。
Mol Biol Rep. 2023 Jul;50(7):5879-5887. doi: 10.1007/s11033-023-08537-8. Epub 2023 May 25.
3
Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress.

本文引用的文献

1
Deciphering urban consumer requirements for rice quality gives insights for driving the future acceptability of local rice in Africa: Case study in the city of Saint-Louis in senegal.解读城市消费者对大米品质的需求,可为推动非洲当地大米未来的可接受性提供见解:以塞内加尔圣路易斯市为例
Food Sci Nutr. 2021 Jan 21;9(3):1614-1624. doi: 10.1002/fsn3.2136. eCollection 2021 Mar.
2
Identification of a novel QTL and candidate gene associated with grain size using chromosome segment substitution lines in rice.利用水稻染色体片段代换系鉴定与粒型相关的新 QTL 和候选基因。
Sci Rep. 2021 Jan 8;11(1):189. doi: 10.1038/s41598-020-80667-6.
3
在夜间高温胁迫下,美国水稻重组自交系群体中与粒质性状相关的 QTL 的分子图谱和特征分析。
Sci Rep. 2023 Mar 25;13(1):4880. doi: 10.1038/s41598-023-31399-w.
A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice.
一个控制水稻粒长的微小 QTL,SG3,编码一个 R2R3-MYB 蛋白。
Theor Appl Genet. 2020 Aug;133(8):2387-2399. doi: 10.1007/s00122-020-03606-z. Epub 2020 May 29.
4
A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice.一个新的 QTL qTGW3 编码了 GSK3/SHAGGY 样激酶 OsGSK5/OsSK41,它与 OsARF4 相互作用,负调控水稻的粒长和粒重。
Mol Plant. 2018 May 7;11(5):736-749. doi: 10.1016/j.molp.2018.03.005. Epub 2018 Mar 20.
5
Genetic Mapping of Quantitative Trait Loci for Grain Yield under Drought in Rice under Controlled Greenhouse Conditions.在可控温室条件下水稻干旱胁迫下产量性状数量性状位点的遗传图谱构建
Front Chem. 2018 Jan 8;5:129. doi: 10.3389/fchem.2017.00129. eCollection 2017.
6
Descriptive study of plant resources in the context of the ethnomedicinal relevance of indigenous flora: A case study from Toli Peer National Park, Azad Jammu and Kashmir, Pakistan.从本土植物区系的民族药用相关性角度对植物资源进行的描述性研究:以巴基斯坦阿扎德克什米尔托利皮尔国家公园为例
PLoS One. 2017 Feb 13;12(2):e0171896. doi: 10.1371/journal.pone.0171896. eCollection 2017.
7
Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in rice.水稻中降低籽粒垩白度的基因组区域和异淀粉酶基因的鉴定
PLoS One. 2015 Mar 19;10(3):e0122013. doi: 10.1371/journal.pone.0122013. eCollection 2015.
8
Designing climate-resilient rice with ideal grain quality suited for high-temperature stress.培育具有理想粒质、适应高温胁迫的气候适应性水稻。
J Exp Bot. 2015 Apr;66(7):1737-48. doi: 10.1093/jxb/eru544. Epub 2015 Feb 5.
9
Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice.Chalk5 编码一个液泡 H(+)转运焦磷酸酶,影响水稻的粒状白垩质。
Nat Genet. 2014 Apr;46(4):398-404. doi: 10.1038/ng.2923. Epub 2014 Mar 16.
10
FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm.粉质胚乳 6 编码一个含有 CBM48 结构域的蛋白,该蛋白参与水稻胚乳中复合颗粒的形成和淀粉的合成。
Plant J. 2014 Mar;77(6):917-30. doi: 10.1111/tpj.12444. Epub 2014 Mar 8.