Suppr超能文献

遗传和生物信息学策略在改善哥伦比亚波哥大三种遗传性出血性疾病诊断中的应用

Genetic and Bioinformatic Strategies to Improve Diagnosis in Three Inherited Bleeding Disorders in Bogotá, Colombia.

机构信息

Laboratorio de Genética Humana, Universidad de Los Andes, Bogotá 111711, Colombia.

Department of Basic Sciences, Kyushu Institute of Technology, Kitakyushu 804-8550, Japan.

出版信息

Genes (Basel). 2021 Nov 18;12(11):1807. doi: 10.3390/genes12111807.

Abstract

Inherited bleeding disorders (IBDs) are the most frequent congenital diseases in the Colombian population; three of them are hemophilia A (HA), hemophilia B (HB), and von Willebrand Disease (VWD). Currently, diagnosis relies on multiple clinical laboratory assays to assign a phenotype. Due to the lack of accessibility to these tests, patients can receive an incomplete diagnosis. In these cases, genetic studies reinforce the clinical diagnosis. The present study characterized the molecular genetic basis of 11 HA, three HB, and five VWD patients by sequencing the , or the gene. Twelve variations were found in HA patients, four in HB patients, and 19 in WVD patients. From these variations a total of 25 novel variations were found. Disease-causing variations were used as positive controls for validation of the high-resolution melting (HRM) variant-scanning technique. This approach is a low-cost genetic diagnostic method proposed to be incorporated in developing countries. For the data analysis, we developed an accessible open-source code in Python that improves HRM data analysis with better sensitivity of 95% and without bias when using different HRM equipment and software. Analysis of amplicons with a length greater than 300 bp can be performed by implementing an analysis by denaturation domains.

摘要

遗传性出血性疾病(IBDs)是哥伦比亚人群中最常见的先天性疾病;其中三种是血友病 A(HA)、血友病 B(HB)和血管性血友病(VWD)。目前,诊断依赖于多种临床实验室检测来确定表型。由于无法获得这些检测,患者可能会得到不完全的诊断。在这些情况下,基因研究可以加强临床诊断。本研究通过对 11 例 HA、3 例 HB 和 5 例 VWD 患者的 或 基因进行测序,对其分子遗传基础进行了描述。在 HA 患者中发现了 12 种变异,HB 患者中发现了 4 种,VWD 患者中发现了 19 种。从这些变异中总共发现了 25 种新的变异。致病变异被用作高分辨率熔解(HRM)变异扫描技术验证的阳性对照。这种方法是一种低成本的遗传诊断方法,建议在发展中国家采用。为了数据分析,我们在 Python 中开发了一个可访问的开源代码,该代码通过使用不同的 HRM 设备和软件来提高 HRM 数据分析的灵敏度,达到 95%,并且没有偏差。通过实施变性域分析,可以对长度大于 300 bp 的扩增子进行分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/236f/8625804/f749c008b093/genes-12-01807-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验