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基于circRNA相关调控网络的食管癌免疫相关生物标志物模型的鉴定

Identification of an Immune-Related Biomarker Model Based on the CircRNA-Associated Regulatory Network for Esophageal Carcinoma.

作者信息

Hu Zhaonian, Xie Jun, Chen Xiaochun, Tang Jia, Zhou Kaiguo, Han Song

机构信息

College of Electronic and Information Engineering, Southwest University, Chongqing, China.

Department of Cardiothoracic Surgery, The Affiliated Suzhou Science and Technology Town Hospital of Nanjing Medical University, Suzhou, Jiangsu, China.

出版信息

J Oncol. 2021 Nov 17;2021:1334571. doi: 10.1155/2021/1334571. eCollection 2021.

Abstract

Esophageal carcinoma (ESCA) is one of the most frequent types of malignant tumor that has a dismal prognosis. This research applied datasets aimed from the GEO and TCGA to create a prognostic signature for forecasting the clinical outcome of ESCA patients on the basis of a circRNA-associated regulatory network. . A regulatory network associated with ESCA was established based on transcriptome data of circRNAs, miRNAs, and mRNAs. Functional annotations were implemented to further explore the mechanism of ESCA. Cox relative regression method was applied to create a risk signature. Besides, the immune microenvironment of the signature was investigated by utilizing the CIBERSORT algorithm. . Based on 27 DEcircRNAs, 65 DEmiRNAs, and 780 DEmRNAs, the circRNA-miRNA-mRNA network was finally set up. Functional enrichment unearthed that the regulatory network might participate in phosphorylation negative regulation, MAPK pathway, and PI3K/AKT pathway. This study established a risk scoring signature based on the seven immune-related genes (IRGs) (MARP14, RASGR1, PTK2, HMGB1, DKK1, RARB, and IGF1R), which was validated for its reliability. A stable and accurate nomogram combining immune-related risk scores with clinical features was constructed. Furthermore, we observed that the risk model was also related to the immunocyte infiltration. . Our study successfully created a circRNA-associated regulatory network and further developed an immune-related model to forecast the clinical outcome of ESCA patients as well as to assess their immune status.

摘要

食管癌(ESCA)是最常见的恶性肿瘤类型之一,预后较差。本研究应用来自基因表达综合数据库(GEO)和癌症基因组图谱(TCGA)的数据集,基于circRNA相关调控网络创建一个预后特征,用于预测ESCA患者的临床结局。基于circRNA、miRNA和mRNA的转录组数据建立了与ESCA相关的调控网络。进行功能注释以进一步探索ESCA的机制。应用Cox相对回归方法创建风险特征。此外,利用CIBERSORT算法研究该特征的免疫微环境。基于27个差异表达circRNA、65个差异表达miRNA和780个差异表达mRNA,最终建立了circRNA-miRNA-mRNA网络。功能富集发现该调控网络可能参与磷酸化负调控、丝裂原活化蛋白激酶(MAPK)途径和磷脂酰肌醇-3激酶/蛋白激酶B(PI3K/AKT)途径。本研究基于7个免疫相关基因(IRGs)(MARP14、RASGR1、PTK2、HMGB1、DKK1、RARB和IGF1R)建立了一个风险评分特征,并验证了其可靠性。构建了一个将免疫相关风险评分与临床特征相结合的稳定且准确的列线图。此外,我们观察到风险模型也与免疫细胞浸润有关。我们的研究成功创建了一个circRNA相关调控网络,并进一步开发了一个免疫相关模型,以预测ESCA患者的临床结局并评估其免疫状态。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca3f/8612787/56c11970d237/JO2021-1334571.001.jpg

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