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VO-吡啶甲酸盐配合物与 RNase A 加合物的光谱/计算特性及 X 射线结构

Spectroscopic/Computational Characterization and the X-ray Structure of the Adduct of the VO-Picolinato Complex with RNase A.

机构信息

Department of Chemical Sciences, University of Naples Federico II, I-80126 Napoli, Italy.

Elettra-Sincrotrone Trieste, S.S. 14 km 163.5 in Area Science Park, 34149 Trieste, Italy.

出版信息

Inorg Chem. 2021 Dec 20;60(24):19098-19109. doi: 10.1021/acs.inorgchem.1c02912. Epub 2021 Nov 30.

DOI:10.1021/acs.inorgchem.1c02912
PMID:34847328
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8693189/
Abstract

The structure, stability, and enzymatic activity of the adduct formed upon the reaction of the V-picolinato (pic) complex [VO(pic)(HO)], with an octahedral geometry and the water ligand in to the V═O group, with the bovine pancreatic ribonuclease (RNase A) were studied. While electrospray ionization-mass spectrometry, circular dichroism, and ultraviolet-visible absorption spectroscopy substantiate the interaction between the metal moiety and RNase A, electron paramagnetic resonance (EPR) allows us to determine that a carboxylate group, stemming from Asp or Glu residues, and imidazole nitrogen from His residues are involved in the V binding at acidic and physiological pH, respectively. Crystallographic data demonstrate that the VO(pic) moiety coordinates the side chain of Glu111 of RNase A, by substituting the equatorial water molecule at acidic pH. Computational methods confirm that Glu111 is the most affine residue and interacts favorably with the -6-23-Δ enantiomer establishing an extended network of hydrogen bonds and van der Waals stabilizations. By increasing the pH around neutrality, with the deprotonation of histidine side chains, the binding of the V complex to His105 and His119 could occur, with that to His105 which should be preferred when compared to that to the catalytically important His119. The binding of the V compound affects the enzymatic activity of RNase A, but it does not alter its overall structure and stability.

摘要

研究了八面体几何构型的 V-吡啶甲酸盐(pic)配合物 [VO(pic)(HO)] 与水配体反应生成的加合物的结构、稳定性和酶活性。电喷雾质谱、圆二色性和紫外-可见吸收光谱证实了金属部分与牛胰腺核糖核酸酶(RNase A)之间的相互作用,而电子顺磁共振(EPR)允许我们确定来自 Asp 或 Glu 残基的羧酸盐基团和来自 His 残基的咪唑氮分别参与了在酸性和生理 pH 下的 V 结合。晶体学数据表明,在酸性 pH 下,VO(pic) 部分取代了赤道水分子,与 RNase A 的 Glu111 侧链配位。计算方法证实 Glu111 是最亲和的残基,与 -6-23-Δ 对映体有利相互作用,建立了氢键和范德华稳定的扩展网络。随着组氨酸侧链的去质子化,pH 值在中性附近增加时,V 配合物可能与 His105 和 His119 结合,与 His105 结合应该优于与催化重要的 His119 结合。V 化合物的结合会影响 RNase A 的酶活性,但不会改变其整体结构和稳定性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/f8b5e82feda8/ic1c02912_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/7c073b6ef25a/ic1c02912_0009.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/3b5320e15ef9/ic1c02912_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/a975716d6f23/ic1c02912_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/f8b5e82feda8/ic1c02912_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/7c073b6ef25a/ic1c02912_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/409ca3b1ee24/ic1c02912_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/c353b4dd51ef/ic1c02912_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/ea6fecfdda9b/ic1c02912_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/cca55794cf38/ic1c02912_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/3b5320e15ef9/ic1c02912_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/a975716d6f23/ic1c02912_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9950/8693189/f8b5e82feda8/ic1c02912_0008.jpg

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